Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0856
         (548 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g38680.1 68417.m05477 cold-shock DNA-binding family protein c...    30   0.89 
At4g22530.1 68417.m03251 embryo-abundant protein-related similar...    30   0.89 
At1g03920.1 68414.m00377 protein kinase, putative contains prote...    29   2.7  
At5g66750.1 68418.m08414 SNF2 domain-containing protein / helica...    28   4.7  
At4g34170.1 68417.m04848 kelch repeat-containing F-box family pr...    28   4.7  
At5g42140.1 68418.m05130 zinc finger protein, putative / regulat...    27   6.2  
At5g20730.3 68418.m02464 auxin-responsive factor (ARF7) identica...    27   6.2  
At5g20730.2 68418.m02463 auxin-responsive factor (ARF7) identica...    27   6.2  
At5g20730.1 68418.m02462 auxin-responsive factor (ARF7) identica...    27   6.2  
At5g10510.1 68418.m01217 ovule development protein, putative sim...    27   8.3  

>At4g38680.1 68417.m05477 cold-shock DNA-binding family protein
           contains Pfam domains PF00313: 'Cold-shock' DNA-binding
           domain and PF00098: Zinc knuckle
          Length = 203

 Score = 30.3 bits (65), Expect = 0.89
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 542 GMLGGDGERGVRCWRCSTPRHCSRHC 465
           G  GG G  G  C++C  P H +R C
Sbjct: 119 GGRGGGGRGGSDCYKCGEPGHMARDC 144


>At4g22530.1 68417.m03251 embryo-abundant protein-related similar to
           embryo-abundant protein [Picea glauca] GI:1350531
          Length = 261

 Score = 30.3 bits (65), Expect = 0.89
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +1

Query: 31  DWCSILLSL*WTRRHNTAWTAGQGGG 108
           DW S L +L  + RHN AW AG G G
Sbjct: 22  DWYSKLAAL--SHRHNLAWDAGTGNG 45


>At1g03920.1 68414.m00377 protein kinase, putative contains protein
           kinase domain, Pfam:PF00069
          Length = 569

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = +1

Query: 79  TAWTAGQGGGSFSCSSDMPKRRRLQDLHHKLRVRR 183
           T   AG GGGS S S+  PKR + + L H  + RR
Sbjct: 296 TVGNAGSGGGSESVST-TPKRSQQEQLEHWQKNRR 329


>At5g66750.1 68418.m08414 SNF2 domain-containing protein / helicase
           domain-containing protein similar to
           proliferation-associated SNF2-like protein [Homo
           sapiens] GI:8980660; contains Pfam profiles PF00271:
           Helicase conserved C-terminal domain, PF00176: SNF2
           family N-terminal domain
          Length = 764

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +1

Query: 244 GHCWIHTKVXGANPPLQPREQLAVHDAMAXARQQLQATELSDAALARCIESSD 402
           G    H +   ++ PL+  + LA+      A  +L  T++SDA L R ++ SD
Sbjct: 674 GQGQFHQERAKSSTPLEEEDILALLKEDETAEDKLIQTDISDADLDRLLDRSD 726


>At4g34170.1 68417.m04848 kelch repeat-containing F-box family
           protein low similarity to SKP1 interacting partner 6
           [Arabidopsis thaliana] GI:10716957; contains Pfam
           profiles PF01344: Kelch motif, PF00646: F-box domain
          Length = 293

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 319 RGPRAALSAAGAGWPXSPWCVSSN 248
           R   A +SA G GWP S +CV  N
Sbjct: 209 RWSAADMSANGWGWPGSSYCVIEN 232


>At5g42140.1 68418.m05130 zinc finger protein, putative / regulator
           of chromosome condensation (RCC1) family protein similar
           to zinc finger protein [Arabidopsis thaliana]
           gi|15811367|gb|AAL08940
          Length = 1073

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = -2

Query: 322 RRGPRAALSAAGAGWPXSPWCVSSNGPEPVDPLLARAGVGSS 197
           RRGP        +  P SP+   S+ P  V P+    G+G S
Sbjct: 768 RRGPPKPAVTPSSSRPVSPFSRRSSPPRSVTPIPLNVGLGFS 809


>At5g20730.3 68418.m02464 auxin-responsive factor (ARF7) identical
           to auxin response factor 7 GI:4104929 from [Arabidopsis
           thaliana]
          Length = 1150

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -1

Query: 119 QLNEPPPWPAVQAVLCLLVHHKDNKIEHQSQDQQQ 15
           QL +PP   + Q  L  L+H   N  + QSQ QQQ
Sbjct: 492 QLPQPPTTLSQQQQLQQLLHSSLNHQQQQSQSQQQ 526


>At5g20730.2 68418.m02463 auxin-responsive factor (ARF7) identical
           to auxin response factor 7 GI:4104929 from [Arabidopsis
           thaliana]
          Length = 1164

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -1

Query: 119 QLNEPPPWPAVQAVLCLLVHHKDNKIEHQSQDQQQ 15
           QL +PP   + Q  L  L+H   N  + QSQ QQQ
Sbjct: 491 QLPQPPTTLSQQQQLQQLLHSSLNHQQQQSQSQQQ 525


>At5g20730.1 68418.m02462 auxin-responsive factor (ARF7) identical
           to auxin response factor 7 GI:4104929 from [Arabidopsis
           thaliana]
          Length = 1165

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -1

Query: 119 QLNEPPPWPAVQAVLCLLVHHKDNKIEHQSQDQQQ 15
           QL +PP   + Q  L  L+H   N  + QSQ QQQ
Sbjct: 492 QLPQPPTTLSQQQQLQQLLHSSLNHQQQQSQSQQQ 526


>At5g10510.1 68418.m01217 ovule development protein, putative
           similar to ovule development protein aintegumenta
           (GI:1209099) [Arabidopsis thaliana]
          Length = 566

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 68  LVHHKDNKIEHQSQDQQQTIF 6
           L HH   + +HQ Q QQQ  F
Sbjct: 504 LYHHHQQQQQHQQQQQQQNFF 524


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,370,293
Number of Sequences: 28952
Number of extensions: 189627
Number of successful extensions: 602
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)