Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0853
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    30   0.28 
SPBC725.15 |ura5||orotate phosphoribosyltransferase Ura5 |Schizo...    28   1.1  
SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4 |Schi...    28   1.1  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    28   1.5  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   3.4  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   3.4  
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom...    27   3.4  
SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr 3|||Ma...    27   3.4  
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ...    27   3.4  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    26   4.5  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    26   6.0  
SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr 2|...    26   6.0  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   7.9  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    25   7.9  
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe...    25   7.9  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   7.9  

>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = -1

Query: 140 SSPLASTTSRTISVMTSRLVMMDSISSDTSFTSQGMNSSSTPLSI 6
           S+ + S    + S +TS     DS++S T+ TSQG +SS    S+
Sbjct: 841 SNSITSLNLESTSSVTSTAYTTDSVTSTTALTSQGPSSSVVSSSL 885


>SPBC725.15 |ura5||orotate phosphoribosyltransferase Ura5
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +1

Query: 1   ERIERGVDEEFMPWLVKEVSLEIESIITSRDVITEIVRDVVEARGE 138
           ER++  V+E  +  L KE++L + SI+T  D++     D+  A  +
Sbjct: 158 ERLDPEVNESTIGRLKKELNLPVSSILTLDDIVDFTKSDLTAAESK 203


>SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 289

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/34 (35%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = -1

Query: 107 ISVMTSRLVMMD-SISSDTSFTSQGMNSSSTPLS 9
           + ++T+R  M   ++S+DTS +   M +S+TP+S
Sbjct: 45  LQILTARAAMAAMNMSNDTSMSGMNMTNSTTPMS 78


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = -1

Query: 140 SSPLASTTSRTISVMTSRLVMMDSISSDTSFTSQGMNSSSTPLS 9
           SSP +S+T+ T S  +S      S SS +S +S   +SSS+  S
Sbjct: 142 SSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 185


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 20/44 (45%), Positives = 27/44 (61%)
 Frame = -1

Query: 140 SSPLASTTSRTISVMTSRLVMMDSISSDTSFTSQGMNSSSTPLS 9
           SS  AST+  + SV+ S    M S SS T+ +S   +SSS+PLS
Sbjct: 27  SSAAASTSLSSSSVIPSSSSSMLSSSSATAISS---SSSSSPLS 67


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -1

Query: 140 SSPLASTTSRTISVMTSRLVMMDSISSDTSFTSQGMNSSSTPLS 9
           SSP +S+ S T S   S      ++SS +S +S  + SSS+  S
Sbjct: 348 SSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSS 391



 Score = 25.4 bits (53), Expect = 7.9
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = -1

Query: 140 SSPLASTTS--RTISVMTSRLVMMDSISSDTSFTSQGMNSSSTPLS 9
           SSP +S++S   + S+ TS +    S SS TS +    +SSST  S
Sbjct: 220 SSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASS 265


>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
           Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -3

Query: 498 MPI*CMYI*TSAYLKRHNNTNKHYKHD 418
           +PI C+++ +S  L RHNN  ++  H+
Sbjct: 347 IPIRCIHLQSSEELARHNNVFRYIHHN 373


>SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 328

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/48 (25%), Positives = 23/48 (47%)
 Frame = -1

Query: 149 FLYSSPLASTTSRTISVMTSRLVMMDSISSDTSFTSQGMNSSSTPLSI 6
           F+Y  P+ +T    +   +S+L ++DSI ++      G   S+    I
Sbjct: 247 FIYICPMQATVKHRMVYSSSKLGLLDSIKAELGIVIDGKIESNDAADI 294


>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
           Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +1

Query: 64  EIESIITSRDVITEIVRDVVEARGELYRNVAEREENEQGRNEPED 198
           EI  +  +RD   EIV ++ E R    RN+ E  E EQ +NE  +
Sbjct: 508 EINELQDNRDAALEIVTNIFEQR----RNINEL-EREQSQNEDHE 547


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 580  DTLMSLIYSYYAYILRSRI 636
            DTL S++ +YYAY+L   I
Sbjct: 1469 DTLKSIVTNYYAYVLDDTI 1487


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -3

Query: 87  TRDDGLDLQ*HFLHQPRHELFIDSSLYSL 1
           +RDDGLDL   FLH      F  S  Y +
Sbjct: 189 SRDDGLDLLLGFLHHCESSWFKRSIFYKI 217


>SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = +1

Query: 28  EFMPWLVKEVSLEIESIITSRDVITEIVRD---VVEARGELYRNV 153
           E+   L+ E   EIE++    + + EI RD   ++  +GEL  N+
Sbjct: 166 EYQQRLINERQGEIENLTQGINELNEIFRDLSTIINEQGELVTNI 210


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1036

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = -1

Query: 155  ATFLYSSPLASTTSRTISVMTSRLVMMDSISSDTSFTSQGMNSSST 18
            +T+L SS   + ++ T +  +   V   S SS TS+TS   +SSST
Sbjct: 965  STYL-SSGFQTVSNTTATSGSDDDVKTASTSSSTSYTSSSSSSSST 1009


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1428

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 559  RKEVSKEDTLMSLIYSYYAYILRSRIC 639
            R   +KE+T   L+  YYAY     IC
Sbjct: 1162 RLSFAKENTRSDLVLMYYAYCAWREIC 1188


>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = -1

Query: 140 SSPLASTTSRTISVMTSRLVMMDSISSDTSFTSQGMNSSSTPLS 9
           SS ++STTS + S   S      S SS +S +S   +SSS+  S
Sbjct: 126 SSLVSSTTSSSSSATPSTTSSSSSSSSSSSSSSSKSSSSSSKSS 169


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = -1

Query: 128  ASTTSRTISVMTSRLVMMDS--ISSDTSFTSQGMNSSSTPLS 9
            +ST   + SV+ S   +  S  ++S T  TS  + +SSTP+S
Sbjct: 3440 SSTPITSSSVLNSSTAIASSSILNSSTPITSSSVLNSSTPIS 3481


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,587,617
Number of Sequences: 5004
Number of extensions: 50029
Number of successful extensions: 163
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)