Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0852
         (288 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g69910.1 68414.m08045 protein kinase family protein contains ...    27   2.8  
At1g66450.1 68414.m07549 DC1 domain-containing protein contains ...    25   6.4  
At4g30440.1 68417.m04323 NAD-dependent epimerase/dehydratase fam...    25   8.4  

>At1g69910.1 68414.m08045 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 636

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/40 (30%), Positives = 16/40 (40%)
 Frame = -1

Query: 279 FFIYTKHHFALNTDGCHRRHPRRYVXEFNISSCSTCKW*C 160
           F   T   F ++   C R    R    F + +CS C W C
Sbjct: 115 FIDLTGSPFRVSDSSCSRLSLLRPCSPFTLPNCSRCPWDC 154


>At1g66450.1 68414.m07549 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 700

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -1

Query: 189 SSCSTCKW*CTESRGRSMGRSKNRRVLH 106
           +SCS C W CT        R   R +LH
Sbjct: 482 NSCSACPWLCTTGFFYECDREGCRFILH 509


>At4g30440.1 68417.m04323 NAD-dependent epimerase/dehydratase family
           protein similar to nucleotide sugar epimerase from
           Vibrio vulnificus GI:3093975 [PID:g3093975], WbnF
           [Escherichia coli] GI:5739472, CAPI protein
           {Staphylococcus aureus} SP|P39858; contains Pfam profile
           PF01370 NAD dependent epimerase/dehydratase family
          Length = 429

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 281 YFLFTQNITLHLTLMVVIDDTRVDMXPNLTYL 186
           YF FT+NI     + +     RVD+  + TY+
Sbjct: 280 YFSFTRNILQGKPITIYRGKNRVDLARDFTYI 311


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,398,387
Number of Sequences: 28952
Number of extensions: 51946
Number of successful extensions: 108
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 12,070,560
effective HSP length: 69
effective length of database: 10,072,872
effective search space used: 261894672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)