Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0850
(698 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37277| Best HMM Match : Oxysterol_BP (HMM E-Value=0) 38 0.006
SB_48172| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.51
SB_50149| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_10793| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_5418| Best HMM Match : Spectrin (HMM E-Value=1.50001e-40) 29 4.8
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_321| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_40027| Best HMM Match : RVT_1 (HMM E-Value=3.8e-11) 28 6.3
SB_38362| Best HMM Match : BRCT (HMM E-Value=0) 28 6.3
>SB_37277| Best HMM Match : Oxysterol_BP (HMM E-Value=0)
Length = 926
Score = 38.3 bits (85), Expect = 0.006
Identities = 27/80 (33%), Positives = 38/80 (47%)
Frame = +2
Query: 2 QQRWFAVDPETGVLSYYLYDGPGDTIQPGQPARGEAHLAAAVICPSDEDSKTFTINCASG 181
Q+RWF + G+LSYY + + RG +LA A I ED+ +F I+
Sbjct: 331 QRRWFVLS--NGLLSYYR-----NQAEMAHTCRGTINLAGAFI--DTEDACSFVISNGGT 381
Query: 182 DMLKLRATDARARQEWVDGL 241
+ LRA+ RQ WV L
Sbjct: 382 QVFHLRASTEVERQRWVTAL 401
>SB_48172| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 547
Score = 31.9 bits (69), Expect = 0.51
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 8/88 (9%)
Frame = +2
Query: 2 QQRWFAVDPETGVLSYYLYDGPGDTIQP------GQPARGEAHLAAAVICPSDEDSKTFT 163
Q+RW + E G+LSY+LY G T P Q A + V+C + ++
Sbjct: 280 QRRWCVL--EGGMLSYWLYPGDETTKAPLGSLDLSQCASSHVTTVSRVLC-ARPNTMELV 336
Query: 164 INCASGDMLK-LRATDARA-RQEWVDGL 241
IN + +K L A D +A + W+D L
Sbjct: 337 INKGDNNSIKYLLAADTKADKVTWLDSL 364
>SB_50149| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 656
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +1
Query: 280 NPPLQPR-EQLAVHDAMAXARQQLQATELSDAALARCIESSDSPFPHTDPD 429
NP L+ R E++A+ M+ ++ L +D C + SDS TDP+
Sbjct: 590 NPLLEHRTEKVALSKPMSNGKEDLNTETTADVNKKSCADGSDSIIGTTDPN 640
>SB_10793| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
Frame = -2
Query: 376 GPRH*VRSLVAAAWPTPWRR------GPRAALSAAGAGWPPSPW 263
GPR+ ++ PTPW + GPR + G P+PW
Sbjct: 305 GPRYTSNTMDQGTHPTPWTKVHIQHYGPRYTSNTMDQGTHPTPW 348
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
Frame = -2
Query: 376 GPRH*VRSLVAAAWPTPWRR------GPRAALSAAGAGWPPSPW 263
GPR+ ++ PTPW + GPR + G P+PW
Sbjct: 279 GPRYTSNNMDQRTHPTPWTKVHIKHHGPRYTSNTMDQGTHPTPW 322
>SB_5418| Best HMM Match : Spectrin (HMM E-Value=1.50001e-40)
Length = 514
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +2
Query: 122 AVICPSDEDSKTFTINCASGDMLKLRATDARARQEWVDGLRAIA 253
A +C E K + ++C +M KL + + + W+DG+R +A
Sbjct: 438 AKLCNRSEKRKGYWLDCVR-EMAKLCSRSEKRKGYWLDGVREMA 480
>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6406
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +2
Query: 122 AVICPSDEDSKTFTINCASGDMLKLRATDARARQEWVDGLRAIA 253
A +C E K + ++C +M KL + + + W+DG+R +A
Sbjct: 5263 AKLCNRSEKRKGYWLDCVR-EMAKLCSKSEKRKGYWLDGVREMA 5305
>SB_321| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 496
Score = 28.3 bits (60), Expect = 6.3
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Frame = +2
Query: 2 QQRWFAVDPETGVLSYYLY-DGPGDT-IQPGQPARGEAHLAAAVICPSDEDSKTFTINCA 175
Q+RWF ++ GVL Y++Y D G T IQ G H + + +TF+I
Sbjct: 21 QRRWFVLN-SAGVLEYFIYDDSHGATDIQVGNI---NVHDCTNIFNGESDTGETFSIGLK 76
Query: 176 SGDM-LKLRATDARARQEW 229
S ++ L+A + W
Sbjct: 77 SENVNYYLKAENRLEMDNW 95
>SB_40027| Best HMM Match : RVT_1 (HMM E-Value=3.8e-11)
Length = 587
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 197 RATDARARQEWVDGLRAIAGYTP 265
RA + RA Q+W ++ +AG TP
Sbjct: 141 RAAETRATQQWWSAVKPVAGMTP 163
>SB_38362| Best HMM Match : BRCT (HMM E-Value=0)
Length = 1572
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/60 (30%), Positives = 23/60 (38%)
Frame = -2
Query: 274 PSPWCVSSNGPEPVDPLLARAGVGSSQLQHVAGRAVYGEGLGVFVAWAYHCCS*MSLPPG 95
P W V G +P + L A +L H A + LG F W+ C S PG
Sbjct: 1407 PHEWGVEVAGEQP-NKLATAAKRWRCRLAHQRKTADPSQSLGAFTGWSVFLCVDKSRQPG 1465
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,483,106
Number of Sequences: 59808
Number of extensions: 348300
Number of successful extensions: 1077
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1074
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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