BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= tesS0848 (419 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 01_06_0359 + 28722524-28722613,28722794-28722863,28723062-287231... 27 8.1 >01_06_0359 + 28722524-28722613,28722794-28722863,28723062-28723159, 28724029-28724167,28724243-28724370,28724500-28724592, 28724707-28724757,28725405-28725470,28725568-28725633, 28725900-28725977,28726248-28726427,28726502-28726577, 28726660-28726823,28727569-28727931 Length = 553 Score = 26.6 bits (56), Expect = 8.1 Identities = 12/35 (34%), Positives = 15/35 (42%) Frame = +1 Query: 127 LMDQHFGLGLTPEDFLSXXXGPLVSRGILPPXAXP 231 L QH G+ P FL GP + + P A P Sbjct: 512 LQPQHAGIAQAPNPFLDAGFGPFPASNGMHPQANP 546 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 8,527,237 Number of Sequences: 37544 Number of extensions: 130277 Number of successful extensions: 200 Number of sequences better than 10.0: 1 Number of HSP's better than 10.0 without gapping: 197 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 200 length of database: 14,793,348 effective HSP length: 75 effective length of database: 11,977,548 effective search space used: 766563072 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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