Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0848
         (419 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)                   36   0.018
SB_21424| Best HMM Match : HSP20 (HMM E-Value=0)                       30   0.89 
SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.6  
SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)                 29   1.6  
SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)                 29   1.6  
SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29)                 29   2.1  
SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26)                   27   4.8  

>SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)
          Length = 210

 Score = 35.5 bits (78), Expect = 0.018
 Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +1

Query: 277 DKFXV-NLXVQHFAPXEISVKTADGYIVVXGKHXGXKDQHGYISRQF 414
           DK  +  L V+++ P EIS+K   G I + GKH   + +HGY + +F
Sbjct: 38  DKVEIATLDVKNYRPEEISLKVEHGRIKIDGKHKS-EGEHGYETSEF 83


>SB_21424| Best HMM Match : HSP20 (HMM E-Value=0)
          Length = 424

 Score = 29.9 bits (64), Expect = 0.89
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +1

Query: 253 CSXIKSDKDKFXV-NLXVQHFAPXEISVKTADGYIVVXGKH 372
           C  +    D+  +  L V+ + P EIS K  +G++ V G+H
Sbjct: 231 CRLVYLQLDELEIAKLDVREYRPEEISFKVENGFVKVQGRH 271



 Score = 29.1 bits (62), Expect = 1.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 295 LXVQHFAPXEISVKTADGYIVVXGKH 372
           L V+ + P EIS K  +G++ V G+H
Sbjct: 12  LDVREYRPEEISFKVENGFVKVQGRH 37


>SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 760

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 295 LXVQHFAPXEISVKTADGYIVVXGKH 372
           L V+ + P EIS K  +G++ V G+H
Sbjct: 12  LDVREYRPEEISFKVENGFVKVQGRH 37


>SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
          Length = 190

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 295 LXVQHFAPXEISVKTADGYIVVXGKH 372
           L V+ + P EIS K  +G++ V G+H
Sbjct: 12  LDVREYRPEEISFKVENGFVKVQGRH 37


>SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
          Length = 190

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 295 LXVQHFAPXEISVKTADGYIVVXGKH 372
           L V+ + P EIS K  +G++ V G+H
Sbjct: 12  LDVREYRPEEISFKVENGFVKVQGRH 37


>SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29)
          Length = 189

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +1

Query: 295 LXVQHFAPXEISVKTADGYIVVXGKHXGXKDQHGYISRQF 414
           L V+ + P EIS K  +G + V G+H   + + G+  ++F
Sbjct: 12  LDVKEYRPEEISFKVENGVVKVQGRHVN-EGEFGFELKEF 50



 Score = 26.6 bits (56), Expect = 8.3
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
 Frame = +1

Query: 265 KSDKDKFXVNLXVQHFAPXEISVKTADGYIVVXGKHXGXKDQH---GYISRQF 414
           K+ +DKF + + V  F P  I V+     ++V   H    + H    + +RQF
Sbjct: 92  KAKEDKFSMAIDVAGFPPESIKVQVLGNELLVNANHEVEHEGHYHAMHFNRQF 144


>SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26)
          Length = 695

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 295 LXVQHFAPXEISVKTADGYIVVXGKH 372
           L V+ + P EIS K  +G + V G+H
Sbjct: 13  LDVREYRPEEISFKVENGVVKVQGRH 38


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,784,208
Number of Sequences: 59808
Number of extensions: 142462
Number of successful extensions: 261
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 789494848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)