Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0846
         (499 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P62249 Cluster: 40S ribosomal protein S16; n=64; Eukary...    69   8e-11
UniRef50_Q4PM67 Cluster: Ribosomal protein S16; n=5; Eukaryota|R...    67   2e-10
UniRef50_P40213 Cluster: 40S ribosomal protein S16; n=87; Eukary...    51   1e-05
UniRef50_Q4PHH7 Cluster: Putative uncharacterized protein; n=1; ...    48   1e-04
UniRef50_A3CEI4 Cluster: Putative uncharacterized protein; n=1; ...    40   0.023
UniRef50_Q3LWA6 Cluster: Ribosomal protein S16; n=1; Bigelowiell...    37   0.22 
UniRef50_O59299 Cluster: 30S ribosomal protein S9P; n=4; Archaea...    34   1.5  
UniRef50_Q8SSC2 Cluster: 40S RIBOSOMAL PROTEIN S16; n=1; Encepha...    33   2.7  
UniRef50_Q6ZWL6 Cluster: CDNA FLJ40618 fis, clone THYMU2013089, ...    33   4.7  
UniRef50_Q0LMV2 Cluster: Putative uncharacterized protein; n=1; ...    32   8.2  

>UniRef50_P62249 Cluster: 40S ribosomal protein S16; n=64;
           Eukaryota|Rep: 40S ribosomal protein S16 - Homo sapiens
           (Human)
          Length = 146

 Score = 68.5 bits (160), Expect = 8e-11
 Identities = 50/144 (34%), Positives = 74/144 (51%), Gaps = 5/144 (3%)
 Frame = +1

Query: 4   PIQAVQVFGRXKTATAVAYCKRGHGMLRVNGAPIGIXLXPXCCSTNFRNLSFCSXRXNSX 183
           P+Q+VQVFGR KTATAVA+CKRG+G+++VNG P+ + + P   +  ++ L          
Sbjct: 6   PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEM-IEPR--TLQYKLLEPVLLLGKER 62

Query: 184 WXXSE*QSRVVVMXH---XFTLSDKLFKGSDRLLPEICDEASKGDXRHPSTIXXXXAGXX 354
           +   + + RV    H    + +   + K       +  DEASK + +    +        
Sbjct: 63  FAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIK--DILIQYDRTLL 120

Query: 355 PAFXRAPES--FGGPGARARYXRS 420
            A  R  ES  FGGPGARARY +S
Sbjct: 121 VADPRRCESKKFGGPGARARYQKS 144



 Score = 41.1 bits (92), Expect = 0.013
 Identities = 22/42 (52%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
 Frame = +2

Query: 248 SYSKALIAFYQKYVTK-PPRGIXDILVPYXXXXLVAXPRXFE 370
           S SKAL+A+YQKYV +   + I DIL+ Y    LVA PR  E
Sbjct: 87  SISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCE 128



 Score = 40.7 bits (91), Expect = 0.018
 Identities = 21/49 (42%), Positives = 27/49 (55%)
 Frame = +3

Query: 114 VEXXLLQYKLQEPILLLXKXKFSMXXIRXXXXXXXXXXXXYAIRQAIQR 260
           +E   LQYKL EP+LLL K +F+   IR            YAIRQ+I +
Sbjct: 42  IEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISK 90


>UniRef50_Q4PM67 Cluster: Ribosomal protein S16; n=5; Eukaryota|Rep:
           Ribosomal protein S16 - Ixodes scapularis (Black-legged
           tick) (Deer tick)
          Length = 148

 Score = 66.9 bits (156), Expect = 2e-10
 Identities = 50/145 (34%), Positives = 72/145 (49%), Gaps = 5/145 (3%)
 Frame = +1

Query: 1   EPIQAVQVFGRXKTATAVAYCKRGHGMLRVNGAPIGIXLXPXCCSTNFRNLSFCSXRXNS 180
           E IQ+VQV GR KTATAVAYCKRG+G+L+VNG P+   + P   +  ++ L         
Sbjct: 7   EAIQSVQVLGRKKTATAVAYCKRGNGLLKVNGRPLE-NIEP--LTLRYKLLEPILLLGKE 63

Query: 181 XWXXSE*QSRVV---VMXHXFTLSDKLFKGSDRLLPEICDEASKGDXRHPSTIXXXXAGX 351
            +   + + RV     +   + +   + K       +  DE SK + +   T+       
Sbjct: 64  RFAGVDIRIRVKGGGNVAQIYAIRQAISKALVAYYQKYVDEQSKKEIK--DTLIQYDRTL 121

Query: 352 XPAFXR--APESFGGPGARARYXRS 420
             A  R   P+ FGGPGARARY +S
Sbjct: 122 LVADPRRCEPKKFGGPGARARYQKS 146



 Score = 40.7 bits (91), Expect = 0.018
 Identities = 22/49 (44%), Positives = 27/49 (55%)
 Frame = +3

Query: 114 VEXXLLQYKLQEPILLLXKXKFSMXXIRXXXXXXXXXXXXYAIRQAIQR 260
           +E   L+YKL EPILLL K +F+   IR            YAIRQAI +
Sbjct: 44  IEPLTLRYKLLEPILLLGKERFAGVDIRIRVKGGGNVAQIYAIRQAISK 92



 Score = 37.9 bits (84), Expect = 0.13
 Identities = 20/40 (50%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +2

Query: 254 SKALIAFYQKYV-TKPPRGIXDILVPYXXXXLVAXPRXFE 370
           SKAL+A+YQKYV  +  + I D L+ Y    LVA PR  E
Sbjct: 91  SKALVAYYQKYVDEQSKKEIKDTLIQYDRTLLVADPRRCE 130


>UniRef50_P40213 Cluster: 40S ribosomal protein S16; n=87;
           Eukaryota|Rep: 40S ribosomal protein S16 - Saccharomyces
           cerevisiae (Baker's yeast)
          Length = 143

 Score = 51.2 bits (117), Expect = 1e-05
 Identities = 36/138 (26%), Positives = 60/138 (43%)
 Frame = +1

Query: 7   IQAVQVFGRXKTATAVAYCKRGHGMLRVNGAPIGIXLXPXCCSTNFRNLSFCSXRXNSXW 186
           + +VQ FG+ K+ATAVA+ K G G+++VNG+PI +          +  L        S  
Sbjct: 4   VPSVQTFGKKKSATAVAHVKAGKGLIKVNGSPITLVEPEILRFKVYEPLLLVGLDKFSNI 63

Query: 187 XXSE*QSRVVVMXHXFTLSDKLFKGSDRLLPEICDEASKGDXRHPSTIXXXXAGXXPAFX 366
                 +    +   + +   + KG      +  DE SK + +   T          +  
Sbjct: 64  DIRVRVTGGGHVSQVYAIRQAIAKGLVAYHQKYVDEQSKNELKKAFTSYDRTLLIADSRR 123

Query: 367 RAPESFGGPGARARYXRS 420
             P+ FGG GAR+R+ +S
Sbjct: 124 PEPKKFGGKGARSRFQKS 141



 Score = 37.9 bits (84), Expect = 0.13
 Identities = 21/55 (38%), Positives = 29/55 (52%)
 Frame = +3

Query: 96  GAHWNXVEXXLLQYKLQEPILLLXKXKFSMXXIRXXXXXXXXXXXXYAIRQAIQR 260
           G+    VE  +L++K+ EP+LL+   KFS   IR            YAIRQAI +
Sbjct: 33  GSPITLVEPEILRFKVYEPLLLVGLDKFSNIDIRVRVTGGGHVSQVYAIRQAIAK 87


>UniRef50_Q4PHH7 Cluster: Putative uncharacterized protein; n=1;
           Ustilago maydis|Rep: Putative uncharacterized protein -
           Ustilago maydis (Smut fungus)
          Length = 199

 Score = 48.0 bits (109), Expect = 1e-04
 Identities = 19/33 (57%), Positives = 26/33 (78%)
 Frame = +1

Query: 13  AVQVFGRXKTATAVAYCKRGHGMLRVNGAPIGI 111
           +V  FG+ KTATAVA+CK G G++R+NG PI +
Sbjct: 5   SVSCFGKKKTATAVAHCKEGKGLIRLNGQPISL 37


>UniRef50_A3CEI4 Cluster: Putative uncharacterized protein; n=1;
          Oryza sativa (japonica cultivar-group)|Rep: Putative
          uncharacterized protein - Oryza sativa subsp. japonica
          (Rice)
          Length = 61

 Score = 40.3 bits (90), Expect = 0.023
 Identities = 17/29 (58%), Positives = 21/29 (72%)
 Frame = +1

Query: 4  PIQAVQVFGRXKTATAVAYCKRGHGMLRV 90
          P   VQ FGR KTA AV+YCK G G+++V
Sbjct: 9  PPGTVQCFGRKKTAVAVSYCKPGRGLIKV 37


>UniRef50_Q3LWA6 Cluster: Ribosomal protein S16; n=1; Bigelowiella
           natans|Rep: Ribosomal protein S16 - Bigelowiella natans
           (Pedinomonas minutissima) (Chlorarachnion sp.(strain
           CCMP 621))
          Length = 139

 Score = 37.1 bits (82), Expect = 0.22
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +1

Query: 16  VQVFGRXKTATAVAYCKRGHGMLRVNGAPIGI 111
           +Q FG+ K A A+   K+G G +++NG PI +
Sbjct: 3   IQCFGKKKNAIAITTAKKGSGKIKINGVPINL 34


>UniRef50_O59299 Cluster: 30S ribosomal protein S9P; n=4;
           Archaea|Rep: 30S ribosomal protein S9P - Pyrococcus
           horikoshii
          Length = 135

 Score = 34.3 bits (75), Expect = 1.5
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +1

Query: 7   IQAVQVFGRXKTATAVAYCKRGHGMLRVNGAPIGI 111
           ++ +Q  G+ KTA A A  + G G +R+NG P+ I
Sbjct: 1   MRIIQTTGKRKTAIARAVIREGRGRVRINGKPVEI 35


>UniRef50_Q8SSC2 Cluster: 40S RIBOSOMAL PROTEIN S16; n=1;
           Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S16
           - Encephalitozoon cuniculi
          Length = 145

 Score = 33.5 bits (73), Expect = 2.7
 Identities = 13/18 (72%), Positives = 15/18 (83%)
 Frame = +1

Query: 367 RAPESFGGPGARARYXRS 420
           R P+ FGGPGARARY +S
Sbjct: 126 REPKKFGGPGARARYQKS 143


>UniRef50_Q6ZWL6 Cluster: CDNA FLJ40618 fis, clone THYMU2013089,
           moderately similar to 40S RIBOSOMAL PROTEIN S16; n=2;
           Homo sapiens|Rep: CDNA FLJ40618 fis, clone THYMU2013089,
           moderately similar to 40S RIBOSOMAL PROTEIN S16 - Homo
           sapiens (Human)
          Length = 178

 Score = 32.7 bits (71), Expect = 4.7
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +1

Query: 7   IQAVQVFGRXKTATAVAYCKRGHGMLRVNGAPI 105
           +Q+VQ+F   + A AV  C+ G G +R+N  P+
Sbjct: 18  LQSVQIFTYKEMAIAVVLCRCGSGFIRMNEGPL 50


>UniRef50_Q0LMV2 Cluster: Putative uncharacterized protein; n=1;
           Herpetosiphon aurantiacus ATCC 23779|Rep: Putative
           uncharacterized protein - Herpetosiphon aurantiacus ATCC
           23779
          Length = 95

 Score = 31.9 bits (69), Expect = 8.2
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 39  NRHRSCVLQAWSWNAACKRGAHWNXVEXXLLQYKLQEPIL 158
           N H+  +L +  W+  C+  AHWN     +   ++ EP+L
Sbjct: 35  NNHQVQLLASGEWHCDCEFFAHWNTCSHVMALQRILEPML 74


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 396,124,321
Number of Sequences: 1657284
Number of extensions: 5862883
Number of successful extensions: 11382
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11381
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 29273652170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)