Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0846
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Sc...    49   4e-07
SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosa...    49   4e-07
SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   8.4  

>SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score = 48.8 bits (111), Expect = 4e-07
 Identities = 35/138 (25%), Positives = 56/138 (40%)
 Frame = +1

Query: 7   IQAVQVFGRXKTATAVAYCKRGHGMLRVNGAPIGIXLXPXCCSTNFRNLSFCSXRXNSXW 186
           +Q+VQ FG+   ATAVA+CK G G+++VNGAP+ +          +  +        +  
Sbjct: 1   MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60

Query: 187 XXSE*QSRVVVMXHXFTLSDKLFKGSDRLLPEICDEASKGDXRHPSTIXXXXAGXXPAFX 366
                 S    +   + +   + K       +  DE SK + +                 
Sbjct: 61  DIRVRVSGGGHVSQIYAIRQAISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRR 120

Query: 367 RAPESFGGPGARARYXRS 420
             P+ FGG GARAR  +S
Sbjct: 121 MEPKKFGGHGARARQQKS 138



 Score = 35.1 bits (77), Expect = 0.006
 Identities = 20/55 (36%), Positives = 28/55 (50%)
 Frame = +3

Query: 96  GAHWNXVEXXLLQYKLQEPILLLXKXKFSMXXIRXXXXXXXXXXXXYAIRQAIQR 260
           GA  + V+  +L+ K+ EPIL+    KF+   IR            YAIRQAI +
Sbjct: 30  GAPLSLVQPEILRMKVYEPILVAGADKFAGVDIRVRVSGGGHVSQIYAIRQAISK 84



 Score = 33.1 bits (72), Expect = 0.024
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +2

Query: 254 SKALIAFYQKYVTKPPRG-IXDILVPYXXXXLVAXPRXFE 370
           SKA++A+YQK+V +  +  +   L+ Y    LVA PR  E
Sbjct: 83  SKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRRME 122


>SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 140

 Score = 48.8 bits (111), Expect = 4e-07
 Identities = 35/138 (25%), Positives = 56/138 (40%)
 Frame = +1

Query: 7   IQAVQVFGRXKTATAVAYCKRGHGMLRVNGAPIGIXLXPXCCSTNFRNLSFCSXRXNSXW 186
           +Q+VQ FG+   ATAVA+CK G G+++VNGAP+ +          +  +        +  
Sbjct: 1   MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60

Query: 187 XXSE*QSRVVVMXHXFTLSDKLFKGSDRLLPEICDEASKGDXRHPSTIXXXXAGXXPAFX 366
                 S    +   + +   + K       +  DE SK + +                 
Sbjct: 61  DIRVRVSGGGHVSQIYAIRQAISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRR 120

Query: 367 RAPESFGGPGARARYXRS 420
             P+ FGG GARAR  +S
Sbjct: 121 MEPKKFGGHGARARQQKS 138



 Score = 35.1 bits (77), Expect = 0.006
 Identities = 20/55 (36%), Positives = 28/55 (50%)
 Frame = +3

Query: 96  GAHWNXVEXXLLQYKLQEPILLLXKXKFSMXXIRXXXXXXXXXXXXYAIRQAIQR 260
           GA  + V+  +L+ K+ EPIL+    KF+   IR            YAIRQAI +
Sbjct: 30  GAPLSLVQPEILRMKVYEPILVAGADKFAGVDIRVRVSGGGHVSQIYAIRQAISK 84



 Score = 33.1 bits (72), Expect = 0.024
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +2

Query: 254 SKALIAFYQKYVTKPPRG-IXDILVPYXXXXLVAXPRXFE 370
           SKA++A+YQK+V +  +  +   L+ Y    LVA PR  E
Sbjct: 83  SKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRRME 122


>SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 395

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 284 ISGRRRSEPLNSLSDSVNXXYMTTTLD 204
           ISG+++ EP+ S +DS+       T+D
Sbjct: 337 ISGKKKEEPMESGTDSLESSTAQITVD 363


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,538,334
Number of Sequences: 5004
Number of extensions: 21880
Number of successful extensions: 55
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)