Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0846
(499 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0152 - 1168928-1169377 52 3e-07
11_01_0155 - 1287003-1287452 52 3e-07
03_05_1085 + 30275567-30276178,30277024-30278680,30278835-30278968 29 1.6
10_08_0095 + 14760292-14760624,14760689-14761000,14761768-147624... 29 2.7
03_05_0361 - 23448459-23448910,23448990-23449406,23449542-234497... 29 2.7
04_01_0222 - 2805329-2805780,2805866-2806611,2806730-2806778,280... 27 6.3
01_06_0683 - 31173763-31174635,31175146-31175436 27 8.4
>12_01_0152 - 1168928-1169377
Length = 149
Score = 52.0 bits (119), Expect = 3e-07
Identities = 41/142 (28%), Positives = 59/142 (41%), Gaps = 3/142 (2%)
Frame = +1
Query: 4 PIQAVQVFGRXKTATAVAYCKRGHGMLRVNGAPIGIXLXPXCCSTNFRNLSFCSXRXNSX 183
P VQ FGR KTA AV+YCK G G+++VNG PI + F + S
Sbjct: 9 PPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAG---RSR 65
Query: 184 WXXSE*QSRV---VVMXHXFTLSDKLFKGSDRLLPEICDEASKGDXRHPSTIXXXXAGXX 354
+ + + RV + + + K + DEASK + +
Sbjct: 66 FKDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVA 125
Query: 355 PAFXRAPESFGGPGARARYXRS 420
P+ FGG GARAR+ +S
Sbjct: 126 DPRRCEPKKFGGRGARARFQKS 147
Score = 35.1 bits (77), Expect = 0.032
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +2
Query: 254 SKALIAFYQKYVTK-PPRGIXDILVPYXXXXLVAXPRXFE 370
+KAL+A+YQKYV + + + DI Y LVA PR E
Sbjct: 92 AKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCE 131
Score = 29.1 bits (62), Expect = 2.1
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +3
Query: 114 VEXXLLQYKLQEPILLLXKXKFSMXXIRXXXXXXXXXXXXYAIRQAIQR 260
+ +L+ K EPILL + +F +R YAIRQAI +
Sbjct: 45 IRPEMLRLKAFEPILLAGRSRFKDIDMRIRVRGGGKTSQIYAIRQAIAK 93
>11_01_0155 - 1287003-1287452
Length = 149
Score = 52.0 bits (119), Expect = 3e-07
Identities = 41/142 (28%), Positives = 59/142 (41%), Gaps = 3/142 (2%)
Frame = +1
Query: 4 PIQAVQVFGRXKTATAVAYCKRGHGMLRVNGAPIGIXLXPXCCSTNFRNLSFCSXRXNSX 183
P VQ FGR KTA AV+YCK G G+++VNG PI + F + S
Sbjct: 9 PPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAG---RSR 65
Query: 184 WXXSE*QSRV---VVMXHXFTLSDKLFKGSDRLLPEICDEASKGDXRHPSTIXXXXAGXX 354
+ + + RV + + + K + DEASK + +
Sbjct: 66 FKDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVA 125
Query: 355 PAFXRAPESFGGPGARARYXRS 420
P+ FGG GARAR+ +S
Sbjct: 126 DPRRCEPKKFGGRGARARFQKS 147
Score = 35.1 bits (77), Expect = 0.032
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +2
Query: 254 SKALIAFYQKYVTK-PPRGIXDILVPYXXXXLVAXPRXFE 370
+KAL+A+YQKYV + + + DI Y LVA PR E
Sbjct: 92 AKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCE 131
Score = 29.1 bits (62), Expect = 2.1
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +3
Query: 114 VEXXLLQYKLQEPILLLXKXKFSMXXIRXXXXXXXXXXXXYAIRQAIQR 260
+ +L+ K EPILL + +F +R YAIRQAI +
Sbjct: 45 IRPEMLRLKAFEPILLAGRSRFKDIDMRIRVRGGGKTSQIYAIRQAIAK 93
>03_05_1085 + 30275567-30276178,30277024-30278680,30278835-30278968
Length = 800
Score = 29.5 bits (63), Expect = 1.6
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +1
Query: 49 AVAYCKRGHGMLRVNGAPI--GIXLXPXCCSTN 141
+++ C RGH LR GA I + L CCS N
Sbjct: 250 SMSACPRGHRPLRATGAAISTAVALLEGCCSPN 282
>10_08_0095 +
14760292-14760624,14760689-14761000,14761768-14762489,
14762905-14763187,14763419-14763650,14763736-14764187
Length = 777
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 197 SDSQGWWSCXTSLRYQTSYSKALIAFYQKYVTKPPR 304
SD W S T +Y + A+IA Q+ + PPR
Sbjct: 461 SDGSSWSSDGTEGQYTSDEDDAIIAMMQEILAAPPR 496
>03_05_0361 -
23448459-23448910,23448990-23449406,23449542-23449735,
23449854-23449902,23450155-23450539,23450578-23450874,
23451650-23451961
Length = 701
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 197 SDSQGWWSCXTSLRYQTSYSKALIAFYQKYVTKPPR 304
SD W S T +Y + A+IA Q+ + PPR
Sbjct: 353 SDGSSWSSDGTEGQYTSDEDDAIIAMMQEILAAPPR 388
>04_01_0222 -
2805329-2805780,2805866-2806611,2806730-2806778,
2807031-2807748,2808513-2808824
Length = 758
Score = 27.5 bits (58), Expect = 6.3
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +2
Query: 197 SDSQGWWSCXTSLRYQTSYSKALIAFYQKYVTKPPR 304
SD W S T +Y + +IA Q+ + PPR
Sbjct: 365 SDGSSWSSYGTEGQYTSDKDDTIIAMMQEILAAPPR 400
>01_06_0683 - 31173763-31174635,31175146-31175436
Length = 387
Score = 27.1 bits (57), Expect = 8.4
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 5 PSRPSKYSDVXKPPPQLRIASV 70
PS+P+K D PP Q +++SV
Sbjct: 224 PSKPAKKKDAPAPPAQAQLSSV 245
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,426,106
Number of Sequences: 37544
Number of extensions: 178633
Number of successful extensions: 359
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 359
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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