Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0846
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.002

>SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 21/40 (52%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = +2

Query: 254 SKALIAFYQKYVTK-PPRGIXDILVPYXXXXLVAXPRXFE 370
           SK+L+A+YQKYV +   + I DILV Y    LVA PR  E
Sbjct: 50  SKSLVAYYQKYVDEVSKKEIRDILVQYDRSLLVADPRRTE 89



 Score = 33.9 bits (74), Expect = 0.075
 Identities = 18/41 (43%), Positives = 22/41 (53%)
 Frame = +3

Query: 138 KLQEPILLLXKXKFSMXXIRXXXXXXXXXXXXYAIRQAIQR 260
           K++EPILLL K +F    IR            YAIRQAI +
Sbjct: 11  KVEEPILLLGKERFEGVDIRVRVKGGGHTSRIYAIRQAISK 51



 Score = 27.9 bits (59), Expect = 4.9
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +1

Query: 376 ESFGGPGARARYXRS 420
           + FGGPGAR+RY +S
Sbjct: 91  KKFGGPGARSRYQKS 105


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,393,069
Number of Sequences: 59808
Number of extensions: 185579
Number of successful extensions: 319
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 318
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)