Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0846
(499 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M60854-1|AAA60583.1| 146|Homo sapiens RPS16 protein. 69 1e-11
BC007977-1|AAH07977.1| 146|Homo sapiens ribosomal protein S16 p... 69 1e-11
BC004324-1|AAH04324.1| 146|Homo sapiens ribosomal protein S16 p... 69 1e-11
AB061841-1|BAB79479.1| 146|Homo sapiens ribosomal protein S16 p... 69 1e-11
BC071674-1|AAH71674.1| 152|Homo sapiens RPS16 protein protein. 60 4e-09
AK097937-1|BAC85106.1| 178|Homo sapiens protein ( Homo sapiens ... 33 0.73
BC081541-1|AAH81541.1| 701|Homo sapiens poly (ADP-ribose) polym... 30 5.1
AL137255-1|CAB70657.1| 598|Homo sapiens hypothetical protein pr... 30 5.1
AL136766-1|CAB66700.1| 701|Homo sapiens hypothetical protein pr... 30 5.1
AC025816-1|AAF66161.1| 178|Homo sapiens unknown protein. 30 5.1
>M60854-1|AAA60583.1| 146|Homo sapiens RPS16 protein.
Length = 146
Score = 68.5 bits (160), Expect = 1e-11
Identities = 50/144 (34%), Positives = 74/144 (51%), Gaps = 5/144 (3%)
Frame = +1
Query: 4 PIQAVQVFGRXKTATAVAYCKRGHGMLRVNGAPIGIXLXPXCCSTNFRNLSFCSXRXNSX 183
P+Q+VQVFGR KTATAVA+CKRG+G+++VNG P+ + + P + ++ L
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEM-IEPR--TLQYKLLEPVLLLGKER 62
Query: 184 WXXSE*QSRVVVMXH---XFTLSDKLFKGSDRLLPEICDEASKGDXRHPSTIXXXXAGXX 354
+ + + RV H + + + K + DEASK + + +
Sbjct: 63 FAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIK--DILIQYDRTLL 120
Query: 355 PAFXRAPES--FGGPGARARYXRS 420
A R ES FGGPGARARY +S
Sbjct: 121 VADPRRCESKKFGGPGARARYQKS 144
Score = 41.1 bits (92), Expect = 0.002
Identities = 22/42 (52%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = +2
Query: 248 SYSKALIAFYQKYVTK-PPRGIXDILVPYXXXXLVAXPRXFE 370
S SKAL+A+YQKYV + + I DIL+ Y LVA PR E
Sbjct: 87 SISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCE 128
Score = 40.7 bits (91), Expect = 0.003
Identities = 21/49 (42%), Positives = 27/49 (55%)
Frame = +3
Query: 114 VEXXLLQYKLQEPILLLXKXKFSMXXIRXXXXXXXXXXXXYAIRQAIQR 260
+E LQYKL EP+LLL K +F+ IR YAIRQ+I +
Sbjct: 42 IEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISK 90
>BC007977-1|AAH07977.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 68.5 bits (160), Expect = 1e-11
Identities = 50/144 (34%), Positives = 74/144 (51%), Gaps = 5/144 (3%)
Frame = +1
Query: 4 PIQAVQVFGRXKTATAVAYCKRGHGMLRVNGAPIGIXLXPXCCSTNFRNLSFCSXRXNSX 183
P+Q+VQVFGR KTATAVA+CKRG+G+++VNG P+ + + P + ++ L
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEM-IEPR--TLQYKLLEPVLLLGKER 62
Query: 184 WXXSE*QSRVVVMXH---XFTLSDKLFKGSDRLLPEICDEASKGDXRHPSTIXXXXAGXX 354
+ + + RV H + + + K + DEASK + + +
Sbjct: 63 FAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIK--DILIQYDRTLL 120
Query: 355 PAFXRAPES--FGGPGARARYXRS 420
A R ES FGGPGARARY +S
Sbjct: 121 VADPRRCESKKFGGPGARARYQKS 144
Score = 41.1 bits (92), Expect = 0.002
Identities = 22/42 (52%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = +2
Query: 248 SYSKALIAFYQKYVTK-PPRGIXDILVPYXXXXLVAXPRXFE 370
S SKAL+A+YQKYV + + I DIL+ Y LVA PR E
Sbjct: 87 SISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCE 128
Score = 40.7 bits (91), Expect = 0.003
Identities = 21/49 (42%), Positives = 27/49 (55%)
Frame = +3
Query: 114 VEXXLLQYKLQEPILLLXKXKFSMXXIRXXXXXXXXXXXXYAIRQAIQR 260
+E LQYKL EP+LLL K +F+ IR YAIRQ+I +
Sbjct: 42 IEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISK 90
>BC004324-1|AAH04324.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 68.5 bits (160), Expect = 1e-11
Identities = 50/144 (34%), Positives = 74/144 (51%), Gaps = 5/144 (3%)
Frame = +1
Query: 4 PIQAVQVFGRXKTATAVAYCKRGHGMLRVNGAPIGIXLXPXCCSTNFRNLSFCSXRXNSX 183
P+Q+VQVFGR KTATAVA+CKRG+G+++VNG P+ + + P + ++ L
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEM-IEPR--TLQYKLLEPVLLLGKER 62
Query: 184 WXXSE*QSRVVVMXH---XFTLSDKLFKGSDRLLPEICDEASKGDXRHPSTIXXXXAGXX 354
+ + + RV H + + + K + DEASK + + +
Sbjct: 63 FAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIK--DILIQYDRTLL 120
Query: 355 PAFXRAPES--FGGPGARARYXRS 420
A R ES FGGPGARARY +S
Sbjct: 121 VADPRRCESKKFGGPGARARYQKS 144
Score = 41.1 bits (92), Expect = 0.002
Identities = 22/42 (52%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = +2
Query: 248 SYSKALIAFYQKYVTK-PPRGIXDILVPYXXXXLVAXPRXFE 370
S SKAL+A+YQKYV + + I DIL+ Y LVA PR E
Sbjct: 87 SISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCE 128
Score = 40.7 bits (91), Expect = 0.003
Identities = 21/49 (42%), Positives = 27/49 (55%)
Frame = +3
Query: 114 VEXXLLQYKLQEPILLLXKXKFSMXXIRXXXXXXXXXXXXYAIRQAIQR 260
+E LQYKL EP+LLL K +F+ IR YAIRQ+I +
Sbjct: 42 IEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISK 90
>AB061841-1|BAB79479.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 68.5 bits (160), Expect = 1e-11
Identities = 50/144 (34%), Positives = 74/144 (51%), Gaps = 5/144 (3%)
Frame = +1
Query: 4 PIQAVQVFGRXKTATAVAYCKRGHGMLRVNGAPIGIXLXPXCCSTNFRNLSFCSXRXNSX 183
P+Q+VQVFGR KTATAVA+CKRG+G+++VNG P+ + + P + ++ L
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEM-IEPR--TLQYKLLEPVLLLGKER 62
Query: 184 WXXSE*QSRVVVMXH---XFTLSDKLFKGSDRLLPEICDEASKGDXRHPSTIXXXXAGXX 354
+ + + RV H + + + K + DEASK + + +
Sbjct: 63 FAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIK--DILIQYDRTLL 120
Query: 355 PAFXRAPES--FGGPGARARYXRS 420
A R ES FGGPGARARY +S
Sbjct: 121 VADPRRCESKKFGGPGARARYQKS 144
Score = 41.1 bits (92), Expect = 0.002
Identities = 22/42 (52%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = +2
Query: 248 SYSKALIAFYQKYVTK-PPRGIXDILVPYXXXXLVAXPRXFE 370
S SKAL+A+YQKYV + + I DIL+ Y LVA PR E
Sbjct: 87 SISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCE 128
Score = 40.7 bits (91), Expect = 0.003
Identities = 21/49 (42%), Positives = 27/49 (55%)
Frame = +3
Query: 114 VEXXLLQYKLQEPILLLXKXKFSMXXIRXXXXXXXXXXXXYAIRQAIQR 260
+E LQYKL EP+LLL K +F+ IR YAIRQ+I +
Sbjct: 42 IEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISK 90
>BC071674-1|AAH71674.1| 152|Homo sapiens RPS16 protein protein.
Length = 152
Score = 60.1 bits (139), Expect = 4e-09
Identities = 24/34 (70%), Positives = 32/34 (94%)
Frame = +1
Query: 4 PIQAVQVFGRXKTATAVAYCKRGHGMLRVNGAPI 105
P+Q+VQVFGR KTATAVA+CKRG+G+++VNG P+
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPL 39
Score = 32.7 bits (71), Expect = 0.73
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +3
Query: 114 VEXXLLQYKLQEPILLLXKXKFSMXXIR 197
+E LQYKL EP+LLL K +F+ IR
Sbjct: 42 IEPRTLQYKLLEPVLLLGKERFAGVDIR 69
>AK097937-1|BAC85106.1| 178|Homo sapiens protein ( Homo sapiens
cDNA FLJ40618 fis, clone THYMU2013089, moderately
similar to 40S RIBOSOMAL PROTEIN S16. ).
Length = 178
Score = 32.7 bits (71), Expect = 0.73
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +1
Query: 7 IQAVQVFGRXKTATAVAYCKRGHGMLRVNGAPI 105
+Q+VQ+F + A AV C+ G G +R+N P+
Sbjct: 18 LQSVQIFTYKEMAIAVVLCRCGSGFIRMNEGPL 50
>BC081541-1|AAH81541.1| 701|Homo sapiens poly (ADP-ribose)
polymerase family, member 12 protein.
Length = 701
Score = 29.9 bits (64), Expect = 5.1
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +1
Query: 238 LSDKLFKGSDRLLPEICDEASKGDXRHPS 324
L LF+ LLPEIC +KGD H S
Sbjct: 140 LCQLLFQNDPWLLPEICQHYNKGDGPHGS 168
>AL137255-1|CAB70657.1| 598|Homo sapiens hypothetical protein
protein.
Length = 598
Score = 29.9 bits (64), Expect = 5.1
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +1
Query: 238 LSDKLFKGSDRLLPEICDEASKGDXRHPS 324
L LF+ LLPEIC +KGD H S
Sbjct: 37 LCQLLFQNDPWLLPEICQHYNKGDGPHGS 65
>AL136766-1|CAB66700.1| 701|Homo sapiens hypothetical protein
protein.
Length = 701
Score = 29.9 bits (64), Expect = 5.1
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +1
Query: 238 LSDKLFKGSDRLLPEICDEASKGDXRHPS 324
L LF+ LLPEIC +KGD H S
Sbjct: 140 LCQLLFQNDPWLLPEICQHYNKGDGPHGS 168
>AC025816-1|AAF66161.1| 178|Homo sapiens unknown protein.
Length = 178
Score = 29.9 bits (64), Expect = 5.1
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +1
Query: 238 LSDKLFKGSDRLLPEICDEASKGDXRHPS 324
L LF+ LLPEIC +KGD H S
Sbjct: 31 LCQLLFQNDPWLLPEICQHYNKGDGPHGS 59
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,253,165
Number of Sequences: 237096
Number of extensions: 1028964
Number of successful extensions: 2062
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2058
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4536472160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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