Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0846
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78413-6|CAB01658.1|  144|Caenorhabditis elegans Hypothetical pr...    62   2e-10
AL032647-1|CAA21688.2|  470|Caenorhabditis elegans Hypothetical ...    29   1.9  
Z73098-7|CAA97341.1| 1215|Caenorhabditis elegans Hypothetical pr...    28   4.3  

>Z78413-6|CAB01658.1|  144|Caenorhabditis elegans Hypothetical
           protein T01C3.6 protein.
          Length = 144

 Score = 62.1 bits (144), Expect = 2e-10
 Identities = 44/141 (31%), Positives = 65/141 (46%), Gaps = 3/141 (2%)
 Frame = +1

Query: 7   IQAVQVFGRXKTATAVAYCKRGHGMLRVNGAPIGIXLXPXCCSTNFRNLSFCSXRXNSXW 186
           +Q+VQ FGR KTATAVA+CK+G G+++VNG P+   L P       +       +    +
Sbjct: 5   VQSVQTFGRKKTATAVAHCKKGQGLIKVNGRPLEF-LEPQILRIKLQEPLLLVGK--ERF 61

Query: 187 XXSE*QSRVVVMXH---XFTLSDKLFKGSDRLLPEICDEASKGDXRHPSTIXXXXAGXXP 357
              + + RV    H    + +   L K       +  DE SK + ++             
Sbjct: 62  QDVDIRIRVSGGGHVAQIYAVRQALAKALVAYYHKYVDEQSKRELKNIFAAYDKSLLVAD 121

Query: 358 AFXRAPESFGGPGARARYXRS 420
              R  + FGGPGARARY +S
Sbjct: 122 PRRRESKKFGGPGARARYQKS 142



 Score = 36.7 bits (81), Expect = 0.009
 Identities = 18/49 (36%), Positives = 27/49 (55%)
 Frame = +3

Query: 114 VEXXLLQYKLQEPILLLXKXKFSMXXIRXXXXXXXXXXXXYAIRQAIQR 260
           +E  +L+ KLQEP+LL+ K +F    IR            YA+RQA+ +
Sbjct: 40  LEPQILRIKLQEPLLLVGKERFQDVDIRIRVSGGGHVAQIYAVRQALAK 88



 Score = 31.9 bits (69), Expect = 0.27
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +2

Query: 254 SKALIAFYQKYV-TKPPRGIXDILVPYXXXXLVAXPRXFE 370
           +KAL+A+Y KYV  +  R + +I   Y    LVA PR  E
Sbjct: 87  AKALVAYYHKYVDEQSKRELKNIFAAYDKSLLVADPRRRE 126


>AL032647-1|CAA21688.2|  470|Caenorhabditis elegans Hypothetical
           protein Y57A10B.1 protein.
          Length = 470

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 284 ISGRRRSEPLNSLSDSVNXXYMTTTLDCHS 195
           + G  +S  LNS  DS    +++TT  CHS
Sbjct: 55  VIGLTKSHSLNSFEDSTASVFVSTTTRCHS 84


>Z73098-7|CAA97341.1| 1215|Caenorhabditis elegans Hypothetical
           protein T21C9.6 protein.
          Length = 1215

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +2

Query: 209 GWWSCXTSLRYQTSYSKALI-AFYQKYVTKP 298
           GWW C ++ R+   YS AL+ +F + Y  KP
Sbjct: 153 GWWKCVSNARF--FYSNALLKSFNEIYNDKP 181


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,892,168
Number of Sequences: 27780
Number of extensions: 133513
Number of successful extensions: 300
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 300
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)