Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0846
         (499 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) simi...    56   1e-08
At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C)            49   2e-06
At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same...    49   2e-06

>At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) similar
           to 40S ribosomal protein S16 GB:AAD22696 [Arabidopsis
           thaliana]
          Length = 146

 Score = 56.0 bits (129), Expect = 1e-08
 Identities = 42/139 (30%), Positives = 61/139 (43%), Gaps = 2/139 (1%)
 Frame = +1

Query: 10  QAVQVFGRXKTATAVAYCKRGHGMLRVNGAPIGIXLXPXCCSTNFRNLSFCSXRXNSXWX 189
           ++VQ FGR KTATAV YCKRG GM+++NG+PI +          F  +        +   
Sbjct: 8   ESVQCFGRKKTATAVTYCKRGSGMIKLNGSPIELYQPEILRFKIFEPVLLLGKHRFAGVD 67

Query: 190 XSE*QSRVVVMXHXFTLSDKLFKGSDRLLPEICDEASKGDXRHPSTIXXXXAGXXPAFXR 369
                +        + +   + K       +  DE SK + +    +         A  R
Sbjct: 68  MRIRATGGGNTSRVYAIRQSIAKALVAYYQKYVDEQSKKEIK--DILMRYDRTLLVADPR 125

Query: 370 APES--FGGPGARARYXRS 420
             ES  FGGPGARAR+ +S
Sbjct: 126 RCESKKFGGPGARARFQKS 144



 Score = 38.7 bits (86), Expect = 0.002
 Identities = 21/42 (50%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
 Frame = +2

Query: 248 SYSKALIAFYQKYV-TKPPRGIXDILVPYXXXXLVAXPRXFE 370
           S +KAL+A+YQKYV  +  + I DIL+ Y    LVA PR  E
Sbjct: 87  SIAKALVAYYQKYVDEQSKKEIKDILMRYDRTLLVADPRRCE 128



 Score = 33.5 bits (73), Expect = 0.081
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +3

Query: 126 LLQYKLQEPILLLXKXKFSMXXIRXXXXXXXXXXXXYAIRQAIQR 260
           +L++K+ EP+LLL K +F+   +R            YAIRQ+I +
Sbjct: 46  ILRFKIFEPVLLLGKHRFAGVDMRIRATGGGNTSRVYAIRQSIAK 90


>At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C)
          Length = 146

 Score = 48.8 bits (111), Expect = 2e-06
 Identities = 39/140 (27%), Positives = 59/140 (42%), Gaps = 3/140 (2%)
 Frame = +1

Query: 10  QAVQVFGRXKTATAVAYCKRGHGMLRVNGAPIGIXLXPXCCSTNFRNLSFCSXRXNSXWX 189
           ++VQ FGR KTA AV +CKRG G++++NG PI +   P      F+            + 
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIEL-FQPEIL--RFKIFEPVLLLGKHRFA 64

Query: 190 XSE*QSRVVVMXHX---FTLSDKLFKGSDRLLPEICDEASKGDXRHPSTIXXXXAGXXPA 360
               + RV    H    + +   + K       +  DE SK + +               
Sbjct: 65  GVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADP 124

Query: 361 FXRAPESFGGPGARARYXRS 420
               P+ FGG GAR+RY +S
Sbjct: 125 RRCEPKKFGGRGARSRYQKS 144



 Score = 39.9 bits (89), Expect = 0.001
 Identities = 22/42 (52%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
 Frame = +2

Query: 248 SYSKALIAFYQKYV-TKPPRGIXDILVPYXXXXLVAXPRXFE 370
           S +KAL+A+YQKYV  +  + I DILV Y    LVA PR  E
Sbjct: 87  SIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCE 128



 Score = 33.5 bits (73), Expect = 0.081
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +3

Query: 126 LLQYKLQEPILLLXKXKFSMXXIRXXXXXXXXXXXXYAIRQAIQR 260
           +L++K+ EP+LLL K +F+   +R            YAIRQ+I +
Sbjct: 46  ILRFKIFEPVLLLGKHRFAGVNMRIRVNGGGHTSQVYAIRQSIAK 90


>At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same as
           GB:Q42340
          Length = 146

 Score = 48.8 bits (111), Expect = 2e-06
 Identities = 35/137 (25%), Positives = 55/137 (40%)
 Frame = +1

Query: 10  QAVQVFGRXKTATAVAYCKRGHGMLRVNGAPIGIXLXPXCCSTNFRNLSFCSXRXNSXWX 189
           ++VQ FGR KTA AV +CKRG G++++NG PI +          F  +        +   
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKHRFAGVN 67

Query: 190 XSE*QSRVVVMXHXFTLSDKLFKGSDRLLPEICDEASKGDXRHPSTIXXXXAGXXPAFXR 369
                +        + +   + K       +  DE SK + +                  
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 127

Query: 370 APESFGGPGARARYXRS 420
            P+ FGG GAR+RY +S
Sbjct: 128 EPKKFGGRGARSRYQKS 144



 Score = 39.9 bits (89), Expect = 0.001
 Identities = 22/42 (52%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
 Frame = +2

Query: 248 SYSKALIAFYQKYV-TKPPRGIXDILVPYXXXXLVAXPRXFE 370
           S +KAL+A+YQKYV  +  + I DILV Y    LVA PR  E
Sbjct: 87  SIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCE 128



 Score = 33.9 bits (74), Expect = 0.061
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = +3

Query: 126 LLQYKLQEPILLLXKXKFSMXXIRXXXXXXXXXXXXYAIRQAIQR 260
           +L++K+ EPILLL K +F+   +R            YAIRQ+I +
Sbjct: 46  ILRFKIFEPILLLGKHRFAGVNMRIRVNGGGHTSQVYAIRQSIAK 90


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,490,645
Number of Sequences: 28952
Number of extensions: 125573
Number of successful extensions: 268
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 265
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)