Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0842
         (414 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g04800.2 68418.m00499 40S ribosomal protein S17 (RPS17D) 40S ...   103   5e-23
At5g04800.1 68418.m00498 40S ribosomal protein S17 (RPS17D) 40S ...   103   5e-23
At3g10610.1 68416.m01276 40S ribosomal protein S17 (RPS17C) simi...   103   5e-23
At2g05220.1 68415.m00550 40S ribosomal protein S17 (RPS17B)           103   5e-23
At2g04390.1 68415.m00442 40S ribosomal protein S17 (RPS17A)           103   5e-23
At5g40530.2 68418.m04918 expressed protein contains Pfam profile...    29   1.6  
At5g40530.1 68418.m04919 expressed protein contains Pfam profile...    29   1.6  
At5g43300.1 68418.m05292 glycerophosphoryl diester phosphodieste...    26   8.7  

>At5g04800.2 68418.m00499 40S ribosomal protein S17 (RPS17D) 40S
           ribosomal protein S17, Lycopersicon esculentum,
           EMBL:AF161704
          Length = 141

 Score =  103 bits (247), Expect = 5e-23
 Identities = 47/64 (73%), Positives = 57/64 (89%)
 Frame = +3

Query: 63  IEKYYTRLXLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 242
           IEKYY+R+ LDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R++   VRGIS+KLQEE
Sbjct: 17  IEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEE 76

Query: 243 ERER 254
           ERER
Sbjct: 77  ERER 80


>At5g04800.1 68418.m00498 40S ribosomal protein S17 (RPS17D) 40S
           ribosomal protein S17, Lycopersicon esculentum,
           EMBL:AF161704
          Length = 141

 Score =  103 bits (247), Expect = 5e-23
 Identities = 47/64 (73%), Positives = 57/64 (89%)
 Frame = +3

Query: 63  IEKYYTRLXLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 242
           IEKYY+R+ LDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R++   VRGIS+KLQEE
Sbjct: 17  IEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEE 76

Query: 243 ERER 254
           ERER
Sbjct: 77  ERER 80


>At3g10610.1 68416.m01276 40S ribosomal protein S17 (RPS17C) similar
           to 40S ribosomal protein S17 GB:AAD50774 [Lycopersicon
           esculentum]
          Length = 140

 Score =  103 bits (247), Expect = 5e-23
 Identities = 47/64 (73%), Positives = 57/64 (89%)
 Frame = +3

Query: 63  IEKYYTRLXLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 242
           IEKYY+R+ LDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R++   VRGIS+KLQEE
Sbjct: 17  IEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEE 76

Query: 243 ERER 254
           ERER
Sbjct: 77  ERER 80


>At2g05220.1 68415.m00550 40S ribosomal protein S17 (RPS17B)
          Length = 140

 Score =  103 bits (247), Expect = 5e-23
 Identities = 47/64 (73%), Positives = 57/64 (89%)
 Frame = +3

Query: 63  IEKYYTRLXLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 242
           IEKYY+R+ LDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R++   VRGIS+KLQEE
Sbjct: 17  IEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEE 76

Query: 243 ERER 254
           ERER
Sbjct: 77  ERER 80


>At2g04390.1 68415.m00442 40S ribosomal protein S17 (RPS17A)
          Length = 141

 Score =  103 bits (247), Expect = 5e-23
 Identities = 47/64 (73%), Positives = 57/64 (89%)
 Frame = +3

Query: 63  IEKYYTRLXLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 242
           IEKYY+R+ LDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R++   VRGIS+KLQEE
Sbjct: 17  IEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEE 76

Query: 243 ERER 254
           ERER
Sbjct: 77  ERER 80


>At5g40530.2 68418.m04918 expressed protein contains Pfam profile
           PF05148: Protein of unknown function (DUF691)
          Length = 301

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -1

Query: 378 GCVSCRPLILLKSSIFNISLVSGSTSMMSCSRADTS 271
           GC   R    +K+ +F+  LVS + S+++C  ++TS
Sbjct: 142 GCGDARIAKSVKNKVFSFDLVSKNPSVIACDMSNTS 177


>At5g40530.1 68418.m04919 expressed protein contains Pfam profile
           PF05148: Protein of unknown function (DUF691)
          Length = 287

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -1

Query: 378 GCVSCRPLILLKSSIFNISLVSGSTSMMSCSRADTS 271
           GC   R    +K+ +F+  LVS + S+++C  ++TS
Sbjct: 142 GCGDARIAKSVKNKVFSFDLVSKNPSVIACDMSNTS 177


>At5g43300.1 68418.m05292 glycerophosphoryl diester
           phosphodiesterase family protein contains Pfam profile
           PF03009: Glycerophosphoryl diester phosphodiesterase
           family
          Length = 333

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -3

Query: 364 QAINIVEVQHLQHILGV-GVYFDDVMFESRHFWDIVVT 254
           Q  N+VEV +LQ+++GV GV  D V   S    +I VT
Sbjct: 254 QLNNVVEVIYLQYLMGVEGVIVDMVKDISEAIANIEVT 291


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,422,789
Number of Sequences: 28952
Number of extensions: 154549
Number of successful extensions: 431
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 625471056
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)