Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0841
(429 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g04800.2 68418.m00499 40S ribosomal protein S17 (RPS17D) 40S ... 103 5e-23
At5g04800.1 68418.m00498 40S ribosomal protein S17 (RPS17D) 40S ... 103 5e-23
At3g10610.1 68416.m01276 40S ribosomal protein S17 (RPS17C) simi... 103 5e-23
At2g05220.1 68415.m00550 40S ribosomal protein S17 (RPS17B) 103 5e-23
At2g04390.1 68415.m00442 40S ribosomal protein S17 (RPS17A) 103 5e-23
At5g40530.2 68418.m04918 expressed protein contains Pfam profile... 29 1.8
At5g40530.1 68418.m04919 expressed protein contains Pfam profile... 29 1.8
At3g24495.1 68416.m03072 DNA mismatch repair protein MSH6-2 (MSH... 27 7.1
At5g43300.1 68418.m05292 glycerophosphoryl diester phosphodieste... 26 9.4
>At5g04800.2 68418.m00499 40S ribosomal protein S17 (RPS17D) 40S
ribosomal protein S17, Lycopersicon esculentum,
EMBL:AF161704
Length = 141
Score = 103 bits (247), Expect = 5e-23
Identities = 47/64 (73%), Positives = 57/64 (89%)
Frame = +3
Query: 63 IEKYYTRLKLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 242
IEKYY+R+ LDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R++ VRGIS+KLQEE
Sbjct: 17 IEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEE 76
Query: 243 ERER 254
ERER
Sbjct: 77 ERER 80
>At5g04800.1 68418.m00498 40S ribosomal protein S17 (RPS17D) 40S
ribosomal protein S17, Lycopersicon esculentum,
EMBL:AF161704
Length = 141
Score = 103 bits (247), Expect = 5e-23
Identities = 47/64 (73%), Positives = 57/64 (89%)
Frame = +3
Query: 63 IEKYYTRLKLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 242
IEKYY+R+ LDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R++ VRGIS+KLQEE
Sbjct: 17 IEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEE 76
Query: 243 ERER 254
ERER
Sbjct: 77 ERER 80
>At3g10610.1 68416.m01276 40S ribosomal protein S17 (RPS17C) similar
to 40S ribosomal protein S17 GB:AAD50774 [Lycopersicon
esculentum]
Length = 140
Score = 103 bits (247), Expect = 5e-23
Identities = 47/64 (73%), Positives = 57/64 (89%)
Frame = +3
Query: 63 IEKYYTRLKLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 242
IEKYY+R+ LDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R++ VRGIS+KLQEE
Sbjct: 17 IEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEE 76
Query: 243 ERER 254
ERER
Sbjct: 77 ERER 80
>At2g05220.1 68415.m00550 40S ribosomal protein S17 (RPS17B)
Length = 140
Score = 103 bits (247), Expect = 5e-23
Identities = 47/64 (73%), Positives = 57/64 (89%)
Frame = +3
Query: 63 IEKYYTRLKLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 242
IEKYY+R+ LDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R++ VRGIS+KLQEE
Sbjct: 17 IEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEE 76
Query: 243 ERER 254
ERER
Sbjct: 77 ERER 80
>At2g04390.1 68415.m00442 40S ribosomal protein S17 (RPS17A)
Length = 141
Score = 103 bits (247), Expect = 5e-23
Identities = 47/64 (73%), Positives = 57/64 (89%)
Frame = +3
Query: 63 IEKYYTRLKLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 242
IEKYY+R+ LDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R++ VRGIS+KLQEE
Sbjct: 17 IEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEE 76
Query: 243 ERER 254
ERER
Sbjct: 77 ERER 80
>At5g40530.2 68418.m04918 expressed protein contains Pfam profile
PF05148: Protein of unknown function (DUF691)
Length = 301
Score = 28.7 bits (61), Expect = 1.8
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = -1
Query: 378 GCVSCRPLILLKSSIFNISLVSGSTSMMSCSRADTS 271
GC R +K+ +F+ LVS + S+++C ++TS
Sbjct: 142 GCGDARIAKSVKNKVFSFDLVSKNPSVIACDMSNTS 177
>At5g40530.1 68418.m04919 expressed protein contains Pfam profile
PF05148: Protein of unknown function (DUF691)
Length = 287
Score = 28.7 bits (61), Expect = 1.8
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = -1
Query: 378 GCVSCRPLILLKSSIFNISLVSGSTSMMSCSRADTS 271
GC R +K+ +F+ LVS + S+++C ++TS
Sbjct: 142 GCGDARIAKSVKNKVFSFDLVSKNPSVIACDMSNTS 177
>At3g24495.1 68416.m03072 DNA mismatch repair protein MSH6-2 (MSH7)
identical to SP|Q9SMV7 DNA mismatch repair protein
MSH6-2 (AtMsh6-2) (MutS homolog 7) {Arabidopsis
thaliana}; GC donor splice site at exon 11
Length = 1109
Score = 26.6 bits (56), Expect = 7.1
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +1
Query: 76 IQD*NLILIQIKEYVKKSLSFLPSLLGIKLL 168
+ D +L +IK V+ S S LP+LLG K+L
Sbjct: 635 LPDLERLLGRIKSSVRSSASVLPALLGKKVL 665
>At5g43300.1 68418.m05292 glycerophosphoryl diester
phosphodiesterase family protein contains Pfam profile
PF03009: Glycerophosphoryl diester phosphodiesterase
family
Length = 333
Score = 26.2 bits (55), Expect = 9.4
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = -3
Query: 364 QAINIVEVQHLQHILGV-GVYFDDVMFESRHFWDIVVT 254
Q N+VEV +LQ+++GV GV D V S +I VT
Sbjct: 254 QLNNVVEVIYLQYLMGVEGVIVDMVKDISEAIANIEVT 291
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,383,767
Number of Sequences: 28952
Number of extensions: 152140
Number of successful extensions: 443
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 675111616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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