Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0840
         (299 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac...    24   4.2  
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce...    23   7.3  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      23   7.3  

>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
           Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 24.2 bits (50), Expect = 4.2
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +3

Query: 81  HCVIYWVYPKIHDES 125
           HC + W + K+H+E+
Sbjct: 71  HCPLLWKWSKVHEEA 85


>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 747

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 108 LDKPNK*HSVEVLLLYIYLLN 46
           L  P   H  ++LLL++YLLN
Sbjct: 118 LQGPLNLHYADLLLLHLYLLN 138


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -1

Query: 122 FIVNFWINPINNTV*RFYCFIFTY*ISKXF 33
           F +  +I+P ++ V  F+CF F + +   F
Sbjct: 91  FHIAIFIHPYDSNVVPFFCFFFYFSLFSFF 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 899,554
Number of Sequences: 5004
Number of extensions: 11754
Number of successful extensions: 18
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)