Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0840
         (299 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1967| Best HMM Match : ubiquitin (HMM E-Value=4.7e-12)              49   8e-07
SB_8595| Best HMM Match : zf-AD (HMM E-Value=2.7)                      26   6.5  
SB_38732| Best HMM Match : Integrin_alpha (HMM E-Value=0.47)           25   8.6  
SB_28239| Best HMM Match : Integrin_alpha (HMM E-Value=0.47)           25   8.6  
SB_38733| Best HMM Match : Integrin_alpha (HMM E-Value=0.47)           25   8.6  

>SB_1967| Best HMM Match : ubiquitin (HMM E-Value=4.7e-12)
          Length = 348

 Score = 48.8 bits (111), Expect = 8e-07
 Identities = 24/44 (54%), Positives = 30/44 (68%)
 Frame = +1

Query: 118 MKVTVTTLNDXIFVLDVSXDLELXXFKAFCEIXSGFPAKDITLH 249
           MKVTVT  +  IF LDVS DLE+  F+A  E  SG PA +I+L+
Sbjct: 1   MKVTVTGEDGSIFTLDVSVDLEVENFRALLEFESGVPASEISLY 44


>SB_8595| Best HMM Match : zf-AD (HMM E-Value=2.7)
          Length = 347

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 209 RYXQGFLLKTSHCILRQTTSE 271
           RY Q +L++  H +LRQTT +
Sbjct: 299 RYVQEYLVERVHILLRQTTRQ 319


>SB_38732| Best HMM Match : Integrin_alpha (HMM E-Value=0.47)
          Length = 169

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 178 LELXXFKAFCEIXSGFPAKDITLHFK 255
           L +  FK FC   SGF ++++   FK
Sbjct: 112 LSIRLFKVFCVTLSGFTSEEVIGFFK 137


>SB_28239| Best HMM Match : Integrin_alpha (HMM E-Value=0.47)
          Length = 197

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 178 LELXXFKAFCEIXSGFPAKDITLHFK 255
           L +  FK FC   SGF ++++   FK
Sbjct: 120 LSIRLFKVFCVTLSGFTSEEVIGFFK 145


>SB_38733| Best HMM Match : Integrin_alpha (HMM E-Value=0.47)
          Length = 197

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 178 LELXXFKAFCEIXSGFPAKDITLHFK 255
           L +  FK FC   SGF ++++   FK
Sbjct: 120 LSIRLFKVFCVTLSGFTSEEVIGFFK 145


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,605,169
Number of Sequences: 59808
Number of extensions: 90018
Number of successful extensions: 141
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 352102492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)