Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0840
         (299 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC006011-1|AAH06011.1|  211|Homo sapiens DDI2 protein protein.         36   0.031
AL121992-4|CAI22369.1|  399|Homo sapiens DNA-damage inducible pr...    36   0.031
U75370-1|AAB58255.1| 1230|Homo sapiens mitochondrial RNA polymer...    27   8.2  
BC098387-1|AAH98387.1| 1230|Homo sapiens polymerase (RNA) mitoch...    27   8.2  
AC004449-1|AAC06147.1| 1230|Homo sapiens RPOM_HUMAN protein.           27   8.2  
AB209920-1|BAD93157.1| 1072|Homo sapiens DNA-directed RNA polyme...    27   8.2  

>BC006011-1|AAH06011.1|  211|Homo sapiens DDI2 protein protein.
          Length = 211

 Score = 35.5 bits (78), Expect = 0.031
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +1

Query: 139 LNDXIFVLDVSXDLELXXFKAFCEIXSGFPAKD 237
           L++  F L V  D EL  F+A CE+ SG PA +
Sbjct: 12  LSEVTFSLQVDADFELHNFRALCELESGIPAAE 44


>AL121992-4|CAI22369.1|  399|Homo sapiens DNA-damage inducible
           protein 2 (DDI2) protein.
          Length = 399

 Score = 35.5 bits (78), Expect = 0.031
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +1

Query: 139 LNDXIFVLDVSXDLELXXFKAFCEIXSGFPAKD 237
           L++  F L V  D EL  F+A CE+ SG PA +
Sbjct: 12  LSEVTFSLQVDADFELHNFRALCELESGIPAAE 44


>U75370-1|AAB58255.1| 1230|Homo sapiens mitochondrial RNA polymerase
            protein.
          Length = 1230

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 194  LRRFVRYXQGFLLKTSHCILRQTTSEXQKIIXGTR 298
            LR    + Q F+ + SH ++RQ     Q++  GTR
Sbjct: 1014 LRELSDFPQEFVWEASHYLVRQVFKSLQEMFSGTR 1048


>BC098387-1|AAH98387.1| 1230|Homo sapiens polymerase (RNA)
            mitochondrial (DNA directed) protein.
          Length = 1230

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 194  LRRFVRYXQGFLLKTSHCILRQTTSEXQKIIXGTR 298
            LR    + Q F+ + SH ++RQ     Q++  GTR
Sbjct: 1014 LRELSDFPQEFVWEASHYLVRQVFKSLQEMFSGTR 1048


>AC004449-1|AAC06147.1| 1230|Homo sapiens RPOM_HUMAN protein.
          Length = 1230

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 194  LRRFVRYXQGFLLKTSHCILRQTTSEXQKIIXGTR 298
            LR    + Q F+ + SH ++RQ     Q++  GTR
Sbjct: 1014 LRELSDFPQEFVWEASHYLVRQVFKSLQEMFSGTR 1048


>AB209920-1|BAD93157.1| 1072|Homo sapiens DNA-directed RNA
           polymerase variant protein.
          Length = 1072

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 194 LRRFVRYXQGFLLKTSHCILRQTTSEXQKIIXGTR 298
           LR    + Q F+ + SH ++RQ     Q++  GTR
Sbjct: 856 LRELSDFPQEFVWEASHYLVRQVFKSLQEMFSGTR 890


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,196,416
Number of Sequences: 237096
Number of extensions: 396232
Number of successful extensions: 429
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 76,859,062
effective HSP length: 76
effective length of database: 58,839,766
effective search space used: 1353314618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)