Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0840
         (299 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92831-7|CAB07369.2| 2396|Caenorhabditis elegans Hypothetical pr...    27   2.5  
Z81066-8|CAB02974.2| 2396|Caenorhabditis elegans Hypothetical pr...    27   2.5  
U64848-12|AAY86244.1|  231|Caenorhabditis elegans Hypothetical p...    27   3.3  
U42843-7|AAA83598.2|  326|Caenorhabditis elegans Serpentine rece...    26   5.8  
U39996-7|AAA81093.1| 1667|Caenorhabditis elegans Temporarily ass...    25   7.6  

>Z92831-7|CAB07369.2| 2396|Caenorhabditis elegans Hypothetical
           protein F22G12.5 protein.
          Length = 2396

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -3

Query: 117 REFLDKPNK*HSVEVLLLYIYLLNFKXIXQKLYKXGR 7
           + F D+P++ H+    LLYIY L  K   QK +   R
Sbjct: 807 QSFGDQPSQPHTSLTNLLYIYPLALKYDSQKAFSKAR 843


>Z81066-8|CAB02974.2| 2396|Caenorhabditis elegans Hypothetical
           protein F22G12.5 protein.
          Length = 2396

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -3

Query: 117 REFLDKPNK*HSVEVLLLYIYLLNFKXIXQKLYKXGR 7
           + F D+P++ H+    LLYIY L  K   QK +   R
Sbjct: 807 QSFGDQPSQPHTSLTNLLYIYPLALKYDSQKAFSKAR 843


>U64848-12|AAY86244.1|  231|Caenorhabditis elegans Hypothetical
           protein C50E3.14 protein.
          Length = 231

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 205 CEIXSGFPAKDITLHFKANH 264
           C++   F  +D TLHFKA +
Sbjct: 158 CDLTKNFSFRDTTLHFKAGY 177


>U42843-7|AAA83598.2|  326|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 5 protein.
          Length = 326

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = -3

Query: 222 P*XYLTKRLKXXKFQVXRXVQ-HEDXIIESGYCY-FHREFLDKPNK*HSVEVLLLYIYLL 49
           P  +LT R     + V   V  H   ++   +CY ++     +P+K   VE+LLL IYL 
Sbjct: 77  PCQWLTDRTCFNLYSVLVHVYTHTIWLLLISFCYRYYVMIRSEPSK-RQVELLLLIIYLP 135

Query: 48  NF 43
           +F
Sbjct: 136 SF 137


>U39996-7|AAA81093.1| 1667|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 177 protein.
          Length = 1667

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 128 VTFIVNFWINPINNTV*RFYCFIFTY*IS 42
           +T I  FW N INN   R +  +F + +S
Sbjct: 399 LTLISLFWFNFINNRASRIFFLLFIFSLS 427


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,023,530
Number of Sequences: 27780
Number of extensions: 66511
Number of successful extensions: 145
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 313072342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)