Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0840
         (299 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g13235.1 68416.m01666 ubiquitin family protein contains INTER...    30   0.25 
At5g48250.1 68418.m05961 zinc finger (B-box type) family protein...    25   9.4  
At3g10260.3 68416.m01230 reticulon family protein weak similarit...    25   9.4  
At3g10260.2 68416.m01229 reticulon family protein weak similarit...    25   9.4  
At3g10260.1 68416.m01228 reticulon family protein weak similarit...    25   9.4  
At3g07650.2 68416.m00917 zinc finger (B-box type) family protein...    25   9.4  
At3g07650.1 68416.m00916 zinc finger (B-box type) family protein...    25   9.4  

>At3g13235.1 68416.m01666 ubiquitin family protein contains
           INTERPRO:IPR000626 ubiquitin domain
          Length = 414

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +1

Query: 118 MKVTVTTLNDXIFVLDVSXDLELXXFKAFCEIXSGFPAKDITLHFKAN 261
           M++TV T  + I  LDV     +   KA  E+ S  P +   L +  N
Sbjct: 1   MRITVMTAGEQIITLDVDSQETVENVKALLEVESNVPIQQQQLLYNGN 48


>At5g48250.1 68418.m05961 zinc finger (B-box type) family protein
           contains similarity to CONSTANS homologs
          Length = 373

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 285 MIFCXSEVVCLKMQCD 238
           M++C S+  CL + CD
Sbjct: 14  MVYCRSDAACLCLSCD 29


>At3g10260.3 68416.m01230 reticulon family protein weak similarity
           to Nogo-C protein [Rattus norvegicus] GI:6822251;
           contains Pfam profile PF02453: Reticulon; identical to
           cDNA GI:32331854
          Length = 267

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 73  NLYTVLFIGFIQKFTMKVTVTTLNDXI 153
           N  TVL+IGF+   TM V      D +
Sbjct: 204 NFLTVLYIGFVGAHTMPVLYERYEDEV 230


>At3g10260.2 68416.m01229 reticulon family protein weak similarity
           to Nogo-C protein [Rattus norvegicus] GI:6822251;
           contains Pfam profile PF02453: Reticulon; identical to
           cDNA GI:32331854
          Length = 247

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 73  NLYTVLFIGFIQKFTMKVTVTTLNDXI 153
           N  TVL+IGF+   TM V      D +
Sbjct: 184 NFLTVLYIGFVGAHTMPVLYERYEDEV 210


>At3g10260.1 68416.m01228 reticulon family protein weak similarity
           to Nogo-C protein [Rattus norvegicus] GI:6822251;
           contains Pfam profile PF02453: Reticulon; identical to
           cDNA GI:32331854
          Length = 247

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 73  NLYTVLFIGFIQKFTMKVTVTTLNDXI 153
           N  TVL+IGF+   TM V      D +
Sbjct: 184 NFLTVLYIGFVGAHTMPVLYERYEDEV 210


>At3g07650.2 68416.m00917 zinc finger (B-box type) family protein
           similar to zinc finger protein GB:BAA33206 [Oryza
           sativa]
          Length = 372

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 285 MIFCXSEVVCLKMQCD 238
           M++C S+  CL + CD
Sbjct: 14  MVYCRSDAACLCLSCD 29


>At3g07650.1 68416.m00916 zinc finger (B-box type) family protein
           similar to zinc finger protein GB:BAA33206 [Oryza
           sativa]
          Length = 372

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 285 MIFCXSEVVCLKMQCD 238
           M++C S+  CL + CD
Sbjct: 14  MVYCRSDAACLCLSCD 29


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,551,273
Number of Sequences: 28952
Number of extensions: 58529
Number of successful extensions: 104
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 291273680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)