Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0837
         (528 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar...    60   2e-10
SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit L17...    27   2.3  
SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|...    27   2.3  
SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr 1|...    25   9.2  
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    25   9.2  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    25   9.2  
SPAP8A3.02c |||2 OG-Fe|Schizosaccharomyces pombe|chr 1|||Manual        25   9.2  

>SPAC13G6.06c |||glycine cleavage complex subunit
           P|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1017

 Score = 60.1 bits (139), Expect = 2e-10
 Identities = 26/55 (47%), Positives = 36/55 (65%)
 Frame = +3

Query: 288 SEYDLIERVRLIAEKNEIWRSYIGMGYHNCCVPHAIMRNMFENXGWTTQYTPYXA 452
           SE +       +A +N++ +S+IGMGY+N  +P AI RN+ EN  W TQYTPY A
Sbjct: 110 SESEFTTLANNVANQNKLIKSFIGMGYYNVKLPAAIQRNVLENPEWYTQYTPYQA 164



 Score = 38.3 bits (85), Expect = 7e-04
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = +1

Query: 124 FPDRVDFPSRHIGPRDQDIVTMLDLLGYKSLDQLTNDAVPKKIHS 258
           FP    F  RHIGP   D    L+ LGYK  D    D +P  + +
Sbjct: 43  FPALDTFEPRHIGPSKTDQQYQLESLGYKDFDSFLKDVIPDSVRT 87



 Score = 34.3 bits (75), Expect = 0.011
 Identities = 15/23 (65%), Positives = 20/23 (86%)
 Frame = +1

Query: 454 EVAQGRLESLLNYQTMVSADWIG 522
           E++QGRLES++NYQTM+ AD  G
Sbjct: 165 EISQGRLESMMNYQTMI-ADLTG 186


>SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit
           L17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 268

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +1

Query: 4   LKGKLMSRSTIDGFHKTYFE-NKMLSAIRHVTTQSTRSDTLFPDR 135
           LKGK     TI G  +   E NK+L +  H+ ++ T +DT   +R
Sbjct: 102 LKGKESPFETIFGKERKEMESNKLLDSATHLQSRVTEADTKNDER 146


>SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 371

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 73  AFYFRNKFYENHRSYSYS 20
           AFY    FY+NHR Y+ S
Sbjct: 127 AFYRLKNFYQNHRRYTVS 144


>SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +2

Query: 50  KLISKIKC*VPFVMLQHKVLVLIHYSQIEWTSRVD-TLAQGIRI 178
           K    + C  P  + +HKVLV+IH   I   +R+  TL   + I
Sbjct: 22  KCKGSLDCNDPDPIFRHKVLVIIHKLAISSWNRIPLTLCNKLHI 65


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 11/48 (22%), Positives = 25/48 (52%)
 Frame = -2

Query: 422 SXIFKHVPHDGMRYATIVVTHSDVRSPYFILFSYQPNPFY*VVFTYGL 279
           S + +  P D + Y + V+T  D +    ++ S +PN F+ ++  + +
Sbjct: 399 SKLQREYPRDKVLYYSSVLTEFDPKGIQEVVESLRPNNFFAILAAHSI 446


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 421 DGLHNIRRIXXEVAQGRLESLLNYQ 495
           +GLH + R    + +GR + LLN Q
Sbjct: 887 EGLHELLRESQRLCEGRTKELLNSQ 911


>SPAP8A3.02c |||2 OG-Fe|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 225

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +3

Query: 357 GMGYHNCCVPHAIMRNMFEN 416
           G+ Y+  C+P ++ RN+  N
Sbjct: 50  GINYYPNCLPESVQRNLINN 69


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,265,685
Number of Sequences: 5004
Number of extensions: 47725
Number of successful extensions: 141
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)