Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0837
(528 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0741 - 24016204-24016298,24016408-24016525,24016805-240169... 66 1e-11
01_06_0461 + 29553709-29554905,29555051-29555296,29555387-295554... 65 4e-11
04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623... 29 3.1
09_02_0455 + 9517802-9518121,9518177-9518423,9518517-9518804 27 7.1
04_04_0924 - 29449285-29449290,29449386-29449575,29449669-294497... 27 7.1
03_03_0051 - 14091944-14091949,14092045-14092234,14092328-140924... 27 7.1
03_03_0049 + 14082358-14082613,14084662-14084795,14084883-140849... 27 7.1
06_03_0470 - 21113186-21114183,21114273-21115824 27 9.3
>06_03_0741 -
24016204-24016298,24016408-24016525,24016805-24016903,
24016992-24017117,24017200-24017277,24017366-24017554,
24018186-24018338,24018785-24018898,24019576-24019761,
24019845-24019970,24020053-24020248,24020338-24020438,
24020533-24020610,24020707-24020952,24021063-24022253
Length = 1031
Score = 66.5 bits (155), Expect = 1e-11
Identities = 27/55 (49%), Positives = 39/55 (70%)
Frame = +3
Query: 288 SEYDLIERVRLIAEKNEIWRSYIGMGYHNCCVPHAIMRNMFENXGWTTQYTPYXA 452
+E ++IE ++ +A N ++S+IGMGY+N VP I+RN+ EN W TQYTPY A
Sbjct: 122 TESEMIEHMQRLAAMNRAYKSFIGMGYYNTHVPAVILRNLMENPAWYTQYTPYQA 176
Score = 37.5 bits (83), Expect = 0.007
Identities = 19/23 (82%), Positives = 20/23 (86%)
Frame = +1
Query: 454 EVAQGRLESLLNYQTMVSADWIG 522
E+AQGRLESLLNYQTMV AD G
Sbjct: 177 EIAQGRLESLLNYQTMV-ADLTG 198
>01_06_0461 +
29553709-29554905,29555051-29555296,29555387-29555464,
29555557-29555657,29555745-29555940,29556022-29556147,
29556231-29556416,29556921-29557034,29557522-29557674,
29558287-29558475,29558568-29558645,29558728-29558853,
29558942-29559040,29559315-29559432,29559531-29559625
Length = 1033
Score = 64.9 bits (151), Expect = 4e-11
Identities = 26/55 (47%), Positives = 39/55 (70%)
Frame = +3
Query: 288 SEYDLIERVRLIAEKNEIWRSYIGMGYHNCCVPHAIMRNMFENXGWTTQYTPYXA 452
+E +I+ ++ +A N+ ++S+IGMGY+N VP I+RN+ EN W TQYTPY A
Sbjct: 124 TESQMIDHMQRLAAMNKAYKSFIGMGYYNTHVPAVILRNLMENPAWYTQYTPYQA 178
Score = 37.5 bits (83), Expect = 0.007
Identities = 19/23 (82%), Positives = 20/23 (86%)
Frame = +1
Query: 454 EVAQGRLESLLNYQTMVSADWIG 522
E+AQGRLESLLNYQTMV AD G
Sbjct: 179 EIAQGRLESLLNYQTMV-ADLTG 200
>04_04_1593 -
34661670-34661798,34661882-34661989,34662129-34662368,
34662614-34662782,34662872-34663362,34663681-34663991,
34664396-34664473,34665034-34665228,34665363-34665524,
34665759-34665840
Length = 654
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +1
Query: 22 SRSTIDGFHKTYFENKMLSAIRHVTTQSTRSDTLFPDRV 138
+R+T+D HKTY K RH+ + DT PD V
Sbjct: 125 TRATLDALHKTYMTRKE----RHINIVPFKFDTPSPDDV 159
>09_02_0455 + 9517802-9518121,9518177-9518423,9518517-9518804
Length = 284
Score = 27.5 bits (58), Expect = 7.1
Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Frame = +1
Query: 13 KLMSRSTIDGFHKTYFENKMLSAIRHVTTQSTR----SDTLFPDRVDFPSRHIGPRDQDI 180
K M D + +FE +L ++ H S R +D + R ++ + +++
Sbjct: 65 KKMGSGGEDRHRRIWFEWDVLMSLSHPLLPSLRGVLATDVVVGPRRWLQAKLVAAKNRHA 124
Query: 181 VTMLDLLGYKSLDQLTNDAVPKKIHS 258
T+ ++ KS +LTNDA+ ++ +
Sbjct: 125 TTVAEIPPLKSTVELTNDAIVARMEA 150
>04_04_0924 -
29449285-29449290,29449386-29449575,29449669-29449772,
29449845-29449976,29450064-29450162,29450439-29450451,
29450688-29450719,29450802-29450921,29450992-29451105,
29451192-29451325,29454014-29454251
Length = 393
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +3
Query: 243 KEDSFQGLMNISEPISEYDLIERVRLIAEKNEIWRSYI 356
K++SF + ++ E +Y R RLI++ + +WR ++
Sbjct: 269 KDESFVFIDSLFEEEEDYQYNARCRLISKFSIVWRKFV 306
>03_03_0051 -
14091944-14091949,14092045-14092234,14092328-14092431,
14092503-14092634,14092721-14092819,14093096-14093108,
14093344-14093375,14093458-14093577,14093648-14093761,
14093848-14093981,14095005-14095047,14095394-14095445,
14095703-14095761
Length = 365
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +3
Query: 243 KEDSFQGLMNISEPISEYDLIERVRLIAEKNEIWRSYI 356
K++SF + ++ E +Y R RLI++ + +WR ++
Sbjct: 241 KDESFVFIDSLFEEEEDYQYNARCRLISKFSIVWRKFV 278
>03_03_0049 +
14082358-14082613,14084662-14084795,14084883-14084996,
14085067-14085186,14085269-14085300,14085536-14085548,
14085825-14085923,14086010-14086141,14086213-14086316,
14086410-14086599,14086695-14086700
Length = 399
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +3
Query: 243 KEDSFQGLMNISEPISEYDLIERVRLIAEKNEIWRSYI 356
K++SF + ++ E +Y R RLI++ + +WR ++
Sbjct: 275 KDESFVFIDSLFEEEEDYQYNARCRLISKFSIVWRKFV 312
>06_03_0470 - 21113186-21114183,21114273-21115824
Length = 849
Score = 27.1 bits (57), Expect = 9.3
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +1
Query: 166 RDQDIVTMLDLLGYK--SLDQLTNDAVPKKIHSKV 264
R+QD+V +DLL + LD L D ++ H KV
Sbjct: 594 REQDVVNAMDLLAFTKVELDVLREDDGWREFHGKV 628
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,833,246
Number of Sequences: 37544
Number of extensions: 276973
Number of successful extensions: 548
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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