Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0837
         (528 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27105| Best HMM Match : GDC-P (HMM E-Value=0)                       89   2e-18
SB_48196| Best HMM Match : AcetylCoA_hydro (HMM E-Value=1.5e-19)       28   4.1  
SB_2835| Best HMM Match : Spectrin (HMM E-Value=0.14)                  28   4.1  
SB_8274| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.1  
SB_3752| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.1  
SB_41006| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  
SB_58211| Best HMM Match : ANF_receptor (HMM E-Value=0)                27   9.6  

>SB_27105| Best HMM Match : GDC-P (HMM E-Value=0)
          Length = 767

 Score = 89.4 bits (212), Expect = 2e-18
 Identities = 37/60 (61%), Positives = 48/60 (80%)
 Frame = +3

Query: 267 MNISEPISEYDLIERVRLIAEKNEIWRSYIGMGYHNCCVPHAIMRNMFENXGWTTQYTPY 446
           + +SE ISE DL+ R+R I++ N+IWRSYIGMGY++C VP  I+RN+ EN GWTT YTPY
Sbjct: 20  LQLSEAISEPDLLSRLRQISKGNQIWRSYIGMGYYSCHVPTTILRNILENPGWTTPYTPY 79



 Score = 35.9 bits (79), Expect = 0.021
 Identities = 16/18 (88%), Positives = 18/18 (100%)
 Frame = +1

Query: 454 EVAQGRLESLLNYQTMVS 507
           E+AQGRLESLLN+QTMVS
Sbjct: 82  ELAQGRLESLLNFQTMVS 99


>SB_48196| Best HMM Match : AcetylCoA_hydro (HMM E-Value=1.5e-19)
          Length = 381

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -3

Query: 226 LTGLNSCILINLT**LYPDPLGQCVYSG 143
           +T +NSCI ++LT  +  D +G  +YSG
Sbjct: 250 MTAINSCIEVDLTGQVVSDSIGTRMYSG 277


>SB_2835| Best HMM Match : Spectrin (HMM E-Value=0.14)
          Length = 1089

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +3

Query: 183 YYVRFIRIQEFRPVNQ*CSTKEDSFQGLMNISEPISEYDLIE 308
           YYV   ++ E R +++    +ED  Q L++ S+PI   +L+E
Sbjct: 408 YYVTTYQM-ELRKIHRDARAEEDRLQHLLDESDPIQTEELVE 448


>SB_8274| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 209

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +3

Query: 183 YYVRFIRIQEFRPVNQ*CSTKEDSFQGLMNISEPISEYDLIE 308
           YYV   ++ E R +++    +ED  Q L++ S+PI   +L+E
Sbjct: 107 YYVTTYQM-ELRKIHRDARAEEDRLQHLLDESDPIQTEELVE 147


>SB_3752| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1048

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 319 NLTRSIRSYSLMGSLIFIRPWNESSLVLHHWLTGLNS 209
           NLT  +RS  LM   + +R W   S  L+H    LN+
Sbjct: 609 NLTNKLRSKLLMNLHVRLRRWRRESRALNHPQPDLNT 645


>SB_41006| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 725

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 420 RDFQTCSS*WHAVRNNCGNPF 358
           R  QT SS W + RN+CG  F
Sbjct: 335 RVMQTASSPWRSDRNSCGGSF 355


>SB_58211| Best HMM Match : ANF_receptor (HMM E-Value=0)
          Length = 1316

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 10/43 (23%), Positives = 25/43 (58%)
 Frame = +1

Query: 61   ENKMLSAIRHVTTQSTRSDTLFPDRVDFPSRHIGPRDQDIVTM 189
            + +++  ++ +  ++T  ++   D++ F S+H GP   DIV +
Sbjct: 896  QQELVDELKKMRDRNTGFNSAIGDKMFFDSQHDGPASYDIVNL 938


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,430,581
Number of Sequences: 59808
Number of extensions: 339059
Number of successful extensions: 876
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)