Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0837
         (528 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23510-10|AAC46780.1|  979|Caenorhabditis elegans Hypothetical p...    75   4e-14
AF125461-3|AAK18996.2|  282|Caenorhabditis elegans Hypothetical ...    30   0.89 
Z81041-11|CAJ90515.1|  713|Caenorhabditis elegans Hypothetical p...    29   2.7  
Z81041-10|CAB02785.3|  743|Caenorhabditis elegans Hypothetical p...    29   2.7  
Z35639-1|CAA84693.1| 1792|Caenorhabditis elegans Hypothetical pr...    27   8.3  
U97193-9|AAL13319.1|  401|Caenorhabditis elegans Tropomodulin pr...    27   8.3  

>U23510-10|AAC46780.1|  979|Caenorhabditis elegans Hypothetical
           protein R12C12.1a protein.
          Length = 979

 Score = 74.5 bits (175), Expect = 4e-14
 Identities = 29/62 (46%), Positives = 44/62 (70%)
 Frame = +3

Query: 267 MNISEPISEYDLIERVRLIAEKNEIWRSYIGMGYHNCCVPHAIMRNMFENXGWTTQYTPY 446
           + +  P+ EY +++ +  IA +N+I+RSYIGMGY++  VP  I RN+ +N GW +QYTPY
Sbjct: 72  LELPAPLDEYKMLKELEAIAAQNKIYRSYIGMGYYDTIVPAVISRNILQNIGWISQYTPY 131

Query: 447 XA 452
            A
Sbjct: 132 QA 133



 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 20/40 (50%), Positives = 24/40 (60%)
 Frame = +1

Query: 142 FPSRHIGPRDQDIVTMLDLLGYKSLDQLTNDAVPKKIHSK 261
           F  RHIGPR  +   MLD +GYK LD LT   VP  I ++
Sbjct: 30  FVDRHIGPRRLEQQQMLDFIGYKDLDDLTGTNVPNMIKAE 69



 Score = 33.9 bits (74), Expect = 0.072
 Identities = 13/18 (72%), Positives = 18/18 (100%)
 Frame = +1

Query: 454 EVAQGRLESLLNYQTMVS 507
           E++QGRLESLLN+QTM++
Sbjct: 134 EISQGRLESLLNFQTMIA 151


>AF125461-3|AAK18996.2|  282|Caenorhabditis elegans Hypothetical
           protein Y8A9A.5 protein.
          Length = 282

 Score = 30.3 bits (65), Expect = 0.89
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +3

Query: 276 SEPISEYDLIERVRLIAEKNEIWRSYIGMGYHNCCVPHAIMRNM 407
           S  +SE DLI+ +  I E +EI   Y    YHN    H   + +
Sbjct: 93  SANLSERDLIDHIMDITENSEIKELYFKSDYHNVIFLHNCFKGL 136


>Z81041-11|CAJ90515.1|  713|Caenorhabditis elegans Hypothetical
           protein C27A7.3b protein.
          Length = 713

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = +1

Query: 31  TIDGFHKTYFENKMLSAIRHVTTQSTRSDTLFPDRVDFPSRHIGPRDQDIVTML 192
           + DGF K Y E +++ ++  +     ++D ++P    FPS+   P    +VT L
Sbjct: 55  SFDGFAKEYLERRIVKSLELIAECGVKADRVYP---SFPSKTF-PNHYTMVTGL 104


>Z81041-10|CAB02785.3|  743|Caenorhabditis elegans Hypothetical
           protein C27A7.3a protein.
          Length = 743

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = +1

Query: 31  TIDGFHKTYFENKMLSAIRHVTTQSTRSDTLFPDRVDFPSRHIGPRDQDIVTML 192
           + DGF K Y E +++ ++  +     ++D ++P    FPS+   P    +VT L
Sbjct: 85  SFDGFAKEYLERRIVKSLELIAECGVKADRVYP---SFPSKTF-PNHYTMVTGL 134


>Z35639-1|CAA84693.1| 1792|Caenorhabditis elegans Hypothetical protein
            D2045.2 protein.
          Length = 1792

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 10/42 (23%), Positives = 23/42 (54%)
 Frame = +3

Query: 243  KEDSFQGLMNISEPISEYDLIERVRLIAEKNEIWRSYIGMGY 368
            K  ++Q L+ ++  +++ DL+ +   +A  N  W S +G  +
Sbjct: 1017 KLTTYQELLTLASDLNQPDLVYKFMQLARHNATWNSKMGAAH 1058


>U97193-9|AAL13319.1|  401|Caenorhabditis elegans Tropomodulin
           protein 1, isoform b protein.
          Length = 401

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 20/67 (29%), Positives = 30/67 (44%)
 Frame = +1

Query: 43  FHKTYFENKMLSAIRHVTTQSTRSDTLFPDRVDFPSRHIGPRDQDIVTMLDLLGYKSLDQ 222
           +H  Y E K  SA     + +++  T  P +V     + G +D DI  +L  L    L+ 
Sbjct: 17  YHSYYSEEKTFSA----PSANSQQGTQLPSKV----YNKGLKDNDIEGLLSSLSIDELED 68

Query: 223 LTNDAVP 243
           L ND  P
Sbjct: 69  LNNDFDP 75


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,245,416
Number of Sequences: 27780
Number of extensions: 256792
Number of successful extensions: 558
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)