Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0837
         (528 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g26080.1 68415.m03131 glycine dehydrogenase [decarboxylating]...    71   5e-13
At4g33010.1 68417.m04695 glycine dehydrogenase [decarboxylating]...    67   8e-12
At1g18800.1 68414.m02343 nucleosome assembly protein (NAP) famil...    30   1.1  
At1g50630.1 68414.m05690 expressed protein                             29   1.5  
At4g05160.1 68417.m00775 4-coumarate--CoA ligase, putative / 4-c...    28   3.4  
At5g22960.1 68418.m02684 serine carboxypeptidase S10 family prot...    27   5.9  
At4g01980.1 68417.m00264 hypothetical protein contains similarit...    27   7.8  
At2g22710.1 68415.m02690 myb family protein                            27   7.8  

>At2g26080.1 68415.m03131 glycine dehydrogenase [decarboxylating],
           putative / glycine decarboxylase, putative / glycine
           cleavage system P-protein, putative strong similarity to
           SP|P26969 Glycine dehydrogenase [decarboxylating],
           mitochondrial precursor (EC 1.4.4.2) {Pisum sativum};
           contains Pfam profile PF02347: Glycine cleavage system
           P-protein
          Length = 1044

 Score = 70.9 bits (166), Expect = 5e-13
 Identities = 31/66 (46%), Positives = 46/66 (69%)
 Frame = +3

Query: 255 FQGLMNISEPISEYDLIERVRLIAEKNEIWRSYIGMGYHNCCVPHAIMRNMFENXGWTTQ 434
           F G+ +  E ++E  +IE +  +A KN++++S+IGMGY+N  VP  I+RN+ EN  W TQ
Sbjct: 127 FSGIFD--EGLTESQMIEHMSDLASKNKVFKSFIGMGYYNTHVPPVILRNIMENPAWYTQ 184

Query: 435 YTPYXA 452
           YTPY A
Sbjct: 185 YTPYQA 190



 Score = 33.9 bits (74), Expect = 0.068
 Identities = 13/18 (72%), Positives = 18/18 (100%)
 Frame = +1

Query: 454 EVAQGRLESLLNYQTMVS 507
           E++QGRLESLLNYQT+++
Sbjct: 191 EISQGRLESLLNYQTVIT 208



 Score = 29.9 bits (64), Expect = 1.1
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = +1

Query: 97  TQSTRSDTLFPDRVDFPSRHIGPRDQDIVTMLDLLGYKSLDQLTNDAVPKKI 252
           T+S   D L P    FP RH      +   M +  G+ +L+ L +  VPK I
Sbjct: 70  TRSISVDALKPSDT-FPRRHNSATPDEQAQMANYCGFDNLNTLIDSTVPKSI 120


>At4g33010.1 68417.m04695 glycine dehydrogenase [decarboxylating],
           putative / glycine decarboxylase, putative / glycine
           cleavage system P-protein, putative strong similarity to
           SP|P49361 Glycine dehydrogenase [decarboxylating] A,
           mitochondrial precursor (EC 1.4.4.2) {Flaveria
           pringlei}; contains Pfam profile PF02347: Glycine
           cleavage system P-protein
          Length = 1037

 Score = 66.9 bits (156), Expect = 8e-12
 Identities = 27/56 (48%), Positives = 41/56 (73%)
 Frame = +3

Query: 285 ISEYDLIERVRLIAEKNEIWRSYIGMGYHNCCVPHAIMRNMFENXGWTTQYTPYXA 452
           ++E  +I+ +  +A KN++++S+IGMGY+N  VP  I+RN+ EN  W TQYTPY A
Sbjct: 129 LTESQMIQHMVDLASKNKVFKSFIGMGYYNTHVPTVILRNIMENPAWYTQYTPYQA 184



 Score = 32.3 bits (70), Expect = 0.21
 Identities = 12/18 (66%), Positives = 18/18 (100%)
 Frame = +1

Query: 454 EVAQGRLESLLNYQTMVS 507
           E++QGRLESLLN+QT+++
Sbjct: 185 EISQGRLESLLNFQTVIT 202



 Score = 31.9 bits (69), Expect = 0.27
 Identities = 18/56 (32%), Positives = 24/56 (42%)
 Frame = +1

Query: 85  RHVTTQSTRSDTLFPDRVDFPSRHIGPRDQDIVTMLDLLGYKSLDQLTNDAVPKKI 252
           RH  T+S   D + P    FP RH      +   M    G+  +D L +  VPK I
Sbjct: 61  RHQQTRSISVDAVKPSDT-FPRRHNSATPDEQTHMAKFCGFDHIDSLIDATVPKSI 115


>At1g18800.1 68414.m02343 nucleosome assembly protein (NAP) family
           protein similar to SP|Q01105|SET protein (HLA-DR
           associated protein II) (PHAPII) (Phosphatase 2A
           inhibitor I2PP2A) {Homo sapiens}; contains Pfam profile
           PF00956: Nucleosome assembly protein (NAP)
          Length = 256

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -2

Query: 356 DVRSPYFILFSYQPNPFY 303
           DV+S Y I FS+ PNPF+
Sbjct: 112 DVKSGYSITFSFNPNPFF 129


>At1g50630.1 68414.m05690 expressed protein
          Length = 453

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -3

Query: 340 ISFFSAINLTRSIRSYSLMGSLIFIRPWNESSLVLHHWLTGLNSCILI 197
           ++  S + LTR +  Y L   L F + W+ES  V  ++   LN+ + I
Sbjct: 103 VATVSFLCLTRFVSKYGLRRFLFFDKLWDESETVRRNYTNQLNTSLHI 150


>At4g05160.1 68417.m00775 4-coumarate--CoA ligase, putative /
           4-coumaroyl-CoA synthase, putative similar to 4CL2
           [gi:12229665] from Arabidopsis thaliana, 4CL1
           [gi:12229631] from Nicotiana tabacum; contains Pfam
           AMP-binding enzyme domain PF00501; acyl-activating
           enzyme superfamily; identical to cDNA 4-coumarate-CoA
           ligase-like protein (At4g05160) GI:29893226
          Length = 544

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 252 SFQGLMNISEPISEYDLIE 308
           SF  +M +SEP+SEY  +E
Sbjct: 168 SFDNVMELSEPVSEYPFVE 186


>At5g22960.1 68418.m02684 serine carboxypeptidase S10 family protein
           similar to serine carboxypeptidase III [Precursor]
           (SP:P37891) [Oryza sativa]
          Length = 190

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
 Frame = -3

Query: 271 FIRPWNESSLVLHHWLTGLNSCILINLT**LYPDPLGQCVYSGSPLYLGIMYQNEYFVL* 92
           F +  N SS  +  WL+G   C   N     Y   +   +Y   P+  G  Y N+   L 
Sbjct: 53  FFQSRNNSSDPVVIWLSGGPGCSSSNQRYISYLK-ISNLIYVDQPIRTGFSYANDSTDLR 111

Query: 91  HDEWHLA---FYFRNKFYENH 38
           HDE  ++   + F   F++ H
Sbjct: 112 HDEDSVSNDLYDFLQAFFKEH 132


>At4g01980.1 68417.m00264 hypothetical protein contains similarity
           to hypothetical proteins of [Arabidopsis thaliana]
          Length = 302

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +3

Query: 240 TKEDSFQGLMNISEPISEYDLIERVRLIAE 329
           +K    + L++ +EP+SE DL+ + +LI E
Sbjct: 270 SKNQMLESLLSRTEPLSECDLVLKKKLIEE 299


>At2g22710.1 68415.m02690 myb family protein
          Length = 391

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +3

Query: 240 TKEDSFQGLMNISEPISEYDLIERVRLIAE 329
           +K    + L++ +EP+SE DL+ + +LI E
Sbjct: 359 SKNQMLESLLSRTEPLSECDLVLKKKLIEE 388


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,500,175
Number of Sequences: 28952
Number of extensions: 236252
Number of successful extensions: 501
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 977150592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)