BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= tesS0836 (698 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar... 96 5e-21 SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit L17... 27 3.4 SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|... 27 3.4 SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S... 26 6.0 >SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosaccharomyces pombe|chr 1|||Manual Length = 1017 Score = 95.9 bits (228), Expect = 5e-21 Identities = 40/74 (54%), Positives = 56/74 (75%) Frame = +1 Query: 286 SEYDLIERVRLIAEKNEIWRSYIGMGYHNCCVPHAIMRNMFENPGWTTQYTPYQPEVAQG 465 SE + +A +N++ +S+IGMGY+N +P AI RN+ ENP W TQYTPYQ E++QG Sbjct: 110 SESEFTTLANNVANQNKLIKSFIGMGYYNVKLPAAIQRNVLENPEWYTQYTPYQAEISQG 169 Query: 466 RLESLLNYQTMVSD 507 RLES++NYQTM++D Sbjct: 170 RLESMMNYQTMIAD 183 Score = 57.2 bits (132), Expect = 2e-09 Identities = 27/60 (45%), Positives = 40/60 (66%), Gaps = 2/60 (3%) Frame = +3 Query: 510 TGLDVANASLLDEGTAAAEA--LSLCHRHNKRTKFVVSERLHPQTLAVVHTRMDALGLDV 683 TGL ++NASLLDEGTAA EA + + + KR F+V + ++P TL+V+ TR G+ + Sbjct: 185 TGLSISNASLLDEGTAAGEAMVMLMANDKKKRKTFLVDKNIYPNTLSVLRTRASGFGIKI 244 Score = 38.7 bits (86), Expect = 8e-04 Identities = 17/45 (37%), Positives = 22/45 (48%) Frame = +2 Query: 122 FPDRVDFPSRHIGPRDQDIVTMLDLLGYKSLDQLTNDAVPKKIQS 256 FP F RHIGP D L+ LGYK D D +P +++ Sbjct: 43 FPALDTFEPRHIGPSKTDQQYQLESLGYKDFDSFLKDVIPDSVRT 87 >SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit L17|Schizosaccharomyces pombe|chr 3|||Manual Length = 268 Score = 26.6 bits (56), Expect = 3.4 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%) Frame = +2 Query: 2 LKGKLMSRSTIDGFHKTYFE-NKMLSAIRHVTTQSTRSDTLFPDR 133 LKGK TI G + E NK+L + H+ ++ T +DT +R Sbjct: 102 LKGKESPFETIFGKERKEMESNKLLDSATHLQSRVTEADTKNDER 146 >SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 371 Score = 26.6 bits (56), Expect = 3.4 Identities = 10/18 (55%), Positives = 12/18 (66%) Frame = -1 Query: 71 AFYFRNKFYENHRSYSYS 18 AFY FY+NHR Y+ S Sbjct: 127 AFYRLKNFYQNHRRYTVS 144 >SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1206 Score = 25.8 bits (54), Expect = 6.0 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%) Frame = -3 Query: 642 LASGDAIVRTRRTLFVCYACD--TVKVLRQQPY 550 LA G +RR+ F+C ACD TV+VL Y Sbjct: 618 LALGPVQEGSRRSNFMCLACDDATVRVLSLDLY 650 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,052,617 Number of Sequences: 5004 Number of extensions: 66189 Number of successful extensions: 187 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 179 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 187 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 323158234 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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