Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0836
(698 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g26080.1 68415.m03131 glycine dehydrogenase [decarboxylating]... 107 9e-24
At4g33010.1 68417.m04695 glycine dehydrogenase [decarboxylating]... 101 6e-22
At1g18800.1 68414.m02343 nucleosome assembly protein (NAP) famil... 30 1.7
At2g41760.1 68415.m05162 expressed protein 29 2.2
At4g01980.1 68417.m00264 hypothetical protein contains similarit... 28 6.8
At2g22710.1 68415.m02690 myb family protein 28 6.8
At2g22250.2 68415.m02642 aminotransferase class I and II family ... 28 6.8
At2g22250.1 68415.m02641 aminotransferase class I and II family ... 28 6.8
At1g50630.1 68414.m05690 expressed protein 28 6.8
At3g29010.1 68416.m03625 expressed protein ; expression supporte... 27 9.0
>At2g26080.1 68415.m03131 glycine dehydrogenase [decarboxylating],
putative / glycine decarboxylase, putative / glycine
cleavage system P-protein, putative strong similarity to
SP|P26969 Glycine dehydrogenase [decarboxylating],
mitochondrial precursor (EC 1.4.4.2) {Pisum sativum};
contains Pfam profile PF02347: Glycine cleavage system
P-protein
Length = 1044
Score = 107 bits (256), Expect = 9e-24
Identities = 47/91 (51%), Positives = 68/91 (74%)
Frame = +1
Query: 235 STKEDSIQGLMNISEPISEYDLIERVRLIAEKNEIWRSYIGMGYHNCCVPHAIMRNMFEN 414
S + DS++ E ++E +IE + +A KN++++S+IGMGY+N VP I+RN+ EN
Sbjct: 119 SIRLDSMKFSGIFDEGLTESQMIEHMSDLASKNKVFKSFIGMGYYNTHVPPVILRNIMEN 178
Query: 415 PGWTTQYTPYQPEVAQGRLESLLNYQTMVSD 507
P W TQYTPYQ E++QGRLESLLNYQT+++D
Sbjct: 179 PAWYTQYTPYQAEISQGRLESLLNYQTVITD 209
Score = 65.7 bits (153), Expect = 3e-11
Identities = 32/63 (50%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Frame = +3
Query: 510 TGLDVANASLLDEGTAAAEALSLCHR--HNKRTKFVVSERLHPQTLAVVHTRMDALGLDV 683
TGL ++NASLLDEGTAAAEA+++C+ K+ FV++ HPQT+ V TR D L V
Sbjct: 211 TGLPMSNASLLDEGTAAAEAMAMCNNILKGKKKTFVIASNCHPQTIDVCKTRADGFDLKV 270
Query: 684 LVV 692
+ V
Sbjct: 271 VTV 273
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +2
Query: 95 TQSTRSDTLFPDRVDFPSRHIGPRDQDIVTMLDLLGYKSLDQLTNDAVPKKIQ 253
T+S D L P FP RH + M + G+ +L+ L + VPK I+
Sbjct: 70 TRSISVDALKPSDT-FPRRHNSATPDEQAQMANYCGFDNLNTLIDSTVPKSIR 121
>At4g33010.1 68417.m04695 glycine dehydrogenase [decarboxylating],
putative / glycine decarboxylase, putative / glycine
cleavage system P-protein, putative strong similarity to
SP|P49361 Glycine dehydrogenase [decarboxylating] A,
mitochondrial precursor (EC 1.4.4.2) {Flaveria
pringlei}; contains Pfam profile PF02347: Glycine
cleavage system P-protein
Length = 1037
Score = 101 bits (241), Expect = 6e-22
Identities = 41/75 (54%), Positives = 61/75 (81%)
Frame = +1
Query: 283 ISEYDLIERVRLIAEKNEIWRSYIGMGYHNCCVPHAIMRNMFENPGWTTQYTPYQPEVAQ 462
++E +I+ + +A KN++++S+IGMGY+N VP I+RN+ ENP W TQYTPYQ E++Q
Sbjct: 129 LTESQMIQHMVDLASKNKVFKSFIGMGYYNTHVPTVILRNIMENPAWYTQYTPYQAEISQ 188
Query: 463 GRLESLLNYQTMVSD 507
GRLESLLN+QT+++D
Sbjct: 189 GRLESLLNFQTVITD 203
Score = 64.1 bits (149), Expect = 9e-11
Identities = 31/61 (50%), Positives = 42/61 (68%), Gaps = 2/61 (3%)
Frame = +3
Query: 510 TGLDVANASLLDEGTAAAEALSLCHR--HNKRTKFVVSERLHPQTLAVVHTRMDALGLDV 683
TGL ++NASLLDEGTAAAEA+++C+ K+ FV++ HPQT+ V TR D L V
Sbjct: 205 TGLPMSNASLLDEGTAAAEAMAMCNNILKGKKKTFVIASNCHPQTIDVCKTRADGFDLKV 264
Query: 684 L 686
+
Sbjct: 265 V 265
Score = 32.3 bits (70), Expect = 0.32
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = +2
Query: 83 RHVTTQSTRSDTLFPDRVDFPSRHIGPRDQDIVTMLDLLGYKSLDQLTNDAVPKKIQ 253
RH T+S D + P FP RH + M G+ +D L + VPK I+
Sbjct: 61 RHQQTRSISVDAVKPSDT-FPRRHNSATPDEQTHMAKFCGFDHIDSLIDATVPKSIR 116
>At1g18800.1 68414.m02343 nucleosome assembly protein (NAP) family
protein similar to SP|Q01105|SET protein (HLA-DR
associated protein II) (PHAPII) (Phosphatase 2A
inhibitor I2PP2A) {Homo sapiens}; contains Pfam profile
PF00956: Nucleosome assembly protein (NAP)
Length = 256
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -3
Query: 354 DVRSPYFILFSYQPNPFY 301
DV+S Y I FS+ PNPF+
Sbjct: 112 DVKSGYSITFSFNPNPFF 129
>At2g41760.1 68415.m05162 expressed protein
Length = 221
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +1
Query: 397 RNMFENPG-WTTQYTPYQPEVAQ-GRLESLLNYQTM 498
R+M E G WT Q PY+P VAQ G L +L Y M
Sbjct: 147 RHMKEPDGSWTAQPPPYEPIVAQDGILHNLSEYIAM 182
>At4g01980.1 68417.m00264 hypothetical protein contains similarity
to hypothetical proteins of [Arabidopsis thaliana]
Length = 302
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/30 (36%), Positives = 21/30 (70%)
Frame = +1
Query: 238 TKEDSIQGLMNISEPISEYDLIERVRLIAE 327
+K ++ L++ +EP+SE DL+ + +LI E
Sbjct: 270 SKNQMLESLLSRTEPLSECDLVLKKKLIEE 299
>At2g22710.1 68415.m02690 myb family protein
Length = 391
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/30 (36%), Positives = 21/30 (70%)
Frame = +1
Query: 238 TKEDSIQGLMNISEPISEYDLIERVRLIAE 327
+K ++ L++ +EP+SE DL+ + +LI E
Sbjct: 359 SKNQMLESLLSRTEPLSECDLVLKKKLIEE 388
>At2g22250.2 68415.m02642 aminotransferase class I and II family
protein similar to aspartate aminotransferase from
Bacillus stearothermophilus SP|Q59228, Thermus aquaticus
SP|O33822; contains Pfam profile PF00155
aminotransferase, classes I and II
Length = 475
Score = 27.9 bits (59), Expect = 6.8
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = +1
Query: 388 AIMRNMFENPGWTTQYTPYQPEVAQGRLESLLNYQTMVSDRLDWTLLMLPYWM 546
AI R + E G + Y P Q V+ G +SLL V D ++ PYW+
Sbjct: 144 AICRKLKEENGLS--YAPDQILVSNGAKQSLLQAVLAVCSPGDEVIIPAPYWV 194
>At2g22250.1 68415.m02641 aminotransferase class I and II family
protein similar to aspartate aminotransferase from
Bacillus stearothermophilus SP|Q59228, Thermus aquaticus
SP|O33822; contains Pfam profile PF00155
aminotransferase, classes I and II
Length = 428
Score = 27.9 bits (59), Expect = 6.8
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = +1
Query: 388 AIMRNMFENPGWTTQYTPYQPEVAQGRLESLLNYQTMVSDRLDWTLLMLPYWM 546
AI R + E G + Y P Q V+ G +SLL V D ++ PYW+
Sbjct: 97 AICRKLKEENGLS--YAPDQILVSNGAKQSLLQAVLAVCSPGDEVIIPAPYWV 147
>At1g50630.1 68414.m05690 expressed protein
Length = 453
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -1
Query: 338 ISFFSAINLTRSIRSYSLMGSLIFIRPWIESSLVLHHWLTGLNSCILI 195
++ S + LTR + Y L L F + W ES V ++ LN+ + I
Sbjct: 103 VATVSFLCLTRFVSKYGLRRFLFFDKLWDESETVRRNYTNQLNTSLHI 150
>At3g29010.1 68416.m03625 expressed protein ; expression supported
by MPSS
Length = 191
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -3
Query: 645 QLASGDAIVRTRRTLFVCYACDTVKVLRQQPYPHPV 538
+ G ++ + TLFV C+ V QPYP V
Sbjct: 10 RFTGGGTVIVDKSTLFVSLICNKDDVPNVQPYPRSV 45
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,769,746
Number of Sequences: 28952
Number of extensions: 339383
Number of successful extensions: 777
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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