Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0834
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46241-4|CAA86318.1|  837|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical pr...    28   7.4  
Z50797-1|CAA90671.1|  206|Caenorhabditis elegans Hypothetical pr...    28   7.4  
AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.      28   7.4  
AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP ...    28   7.4  

>Z46241-4|CAA86318.1|  837|Caenorhabditis elegans Hypothetical
           protein C38D4.5 protein.
          Length = 837

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = +3

Query: 33  NQKNRFKIFSNYMKK*INKNTRFIKLFLLSVRMHRSHASKNQINNMRPMILEDRTAF 203
           N   RFK F   + +  N+N   +K+ L  +    SH+S+N++      I+   T F
Sbjct: 710 NATTRFKKFEELLSRLPNENRETLKMLLRHLNRVASHSSQNRMQQHNLAIVFGPTLF 766


>Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical protein
            C05C12.3 protein.
          Length = 1694

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 2/90 (2%)
 Frame = +3

Query: 135  RSHASKNQINNMRPMILEDRTAFTSLTNDDSEQQQKPVEEH--RRSGHRGASWCLRRILM 308
            R+ A    I   +  +++        T+DD EQ+QK   E    R+G RG+      + M
Sbjct: 968  RNRARTMSIKKSKKNVIKPPACLKIETSDDDEQEQKKATEMYINRTGKRGSV----AVAM 1023

Query: 309  HHHRFPLKLPAQFGTSDRS*KRLVFSASHH 398
            +H    +    +  T  R      FS+S +
Sbjct: 1024 NHDDMYIDPSEELDTQTRQKSSREFSSSRN 1053


>Z50797-1|CAA90671.1|  206|Caenorhabditis elegans Hypothetical
          protein T22H6.1 protein.
          Length = 206

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +3

Query: 27 KENQKNRFKIFSNYMKK 77
          K N++N FK+FSNY+ +
Sbjct: 43 KYNEENHFKVFSNYLNR 59


>AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.
          Length = 1694

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 2/90 (2%)
 Frame = +3

Query: 135  RSHASKNQINNMRPMILEDRTAFTSLTNDDSEQQQKPVEEH--RRSGHRGASWCLRRILM 308
            R+ A    I   +  +++        T+DD EQ+QK   E    R+G RG+      + M
Sbjct: 968  RNRARTMSIKKSKKNVIKPPACLKIETSDDDEQEQKKATEMYINRTGKRGSV----AVAM 1023

Query: 309  HHHRFPLKLPAQFGTSDRS*KRLVFSASHH 398
            +H    +    +  T  R      FS+S +
Sbjct: 1024 NHDDMYIDPSEELDTQTRQKSSREFSSSRN 1053


>AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP
            homologous cationchannel protein.
          Length = 1681

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 2/90 (2%)
 Frame = +3

Query: 135  RSHASKNQINNMRPMILEDRTAFTSLTNDDSEQQQKPVEEH--RRSGHRGASWCLRRILM 308
            R+ A    I   +  +++        T+DD EQ+QK   E    R+G RG+      + M
Sbjct: 955  RNRARTMSIKKSKKNVIKPPACLKIETSDDDEQEQKKATEMYINRTGKRGSV----AVAM 1010

Query: 309  HHHRFPLKLPAQFGTSDRS*KRLVFSASHH 398
            +H    +    +  T  R      FS+S +
Sbjct: 1011 NHDDMYIDPSEELDTQTRQKSSREFSSSRN 1040


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,481,044
Number of Sequences: 27780
Number of extensions: 355504
Number of successful extensions: 1115
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1115
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)