Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0831
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po...   107   1e-24
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p...    42   6e-05
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    30   0.33 
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    29   0.76 
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...    27   2.3  
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po...    27   3.1  
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S...    25   7.1  
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|...    25   7.1  
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch...    25   9.4  
SPBC19C2.11c |||mitochondrial outer membrane protein |Schizosacc...    25   9.4  
SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces po...    25   9.4  

>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 619

 Score =  107 bits (257), Expect = 1e-24
 Identities = 51/83 (61%), Positives = 64/83 (77%)
 Frame = +1

Query: 256 QVYEETSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIYIPKGINV 435
           QVYEETSG+TVGDPV RTGKPLSVELGPG+  +I+DGIQRPLK I + +QSIYIP+GIN 
Sbjct: 72  QVYEETSGLTVGDPVQRTGKPLSVELGPGLAETIYDGIQRPLKQIFDKSQSIYIPRGINT 131

Query: 436 PSLARGG*LGNLTHLNVKVGSHI 504
            SL R        + ++++G H+
Sbjct: 132 ESLNREHKWDFTPNKDLRIGDHV 154



 Score = 73.3 bits (172), Expect = 3e-14
 Identities = 34/63 (53%), Positives = 47/63 (74%), Gaps = 1/63 (1%)
 Frame = +2

Query: 68  SKGGLRTIAN-EENEERFGYVFAVSGPVVTAEKMSGSAMYELVRVGYNELVGEIIRLEGD 244
           +K  +R++ N +E+E R+G +F+VSGPVV A  M G +MYELVRVG+ ELVGE+IR+  D
Sbjct: 8   AKKAIRSLKNYDEHENRYGSIFSVSGPVVVAANMLGCSMYELVRVGHEELVGEVIRIHQD 67

Query: 245 XAT 253
             T
Sbjct: 68  KCT 70



 Score = 38.7 bits (86), Expect = 7e-04
 Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
 Frame = +3

Query: 510 GDLYGIVHENTLVK-HRMXVPPKAKGTVTISHRXGXTKVTER 632
           GD++G V EN+L   H++ +PP+A+GTVT     G   V E+
Sbjct: 157 GDVFGSVFENSLFNDHKIMLPPRARGTVTYIAEAGSYHVDEK 198


>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 525

 Score = 42.3 bits (95), Expect = 6e-05
 Identities = 22/74 (29%), Positives = 34/74 (45%)
 Frame = +1

Query: 271 TSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIYIPKGINVPSLAR 450
           T G+  G  V+ TG P+S+ +GPG LG I + I  P+ +   +    Y P   + PS   
Sbjct: 113 TEGLVRGTAVIDTGSPISIPVGPGTLGRIMNVIGEPVDERGPIKAVKYSPIHADAPSFEE 172

Query: 451 GG*LGNLTHLNVKV 492
                 +    +KV
Sbjct: 173 QSTTPEILETGIKV 186


>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 29.9 bits (64), Expect = 0.33
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = -3

Query: 235 KTYNLTDEFIVTDTDQLVHSRSGHLFGSDDGSRYGEDISEPLLILLIGDRP 83
           +T +L  E    DTD+ VHS+S    GS+  S    D  E  +I ++G  P
Sbjct: 180 RTPSLVPEHYFDDTDKSVHSKSSS--GSNSLSEASNDDLESSIIQIVGGLP 228


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -2

Query: 368 IPSKMEPKIPGPSSTDKGFPVRSTGSPTVTPE 273
           IPS + P    P  T  GFP R    PT+ P+
Sbjct: 368 IPSTLPPADGVPKPTPDGFPRRFERDPTIPPD 399


>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = -1

Query: 177 ADPDIFSAVTTGPDTAKTYPN 115
           AD  +F AV   PDTAK YPN
Sbjct: 33  ADAVVFKAVGVAPDTAK-YPN 52


>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1076

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = -1

Query: 462 QSTSPGQGRHVDTLGDVDGLSQLVDVLEGTLNTVKDGTQDTGTKFY*QRLSSTE 301
           +S+   Q  HVD     D  S L+ +L   LN       ++G K+Y    SST+
Sbjct: 38  ESSLSAQQPHVD-----DQRSSLLSLLNAGLNASNQSPSNSGPKYYASHSSSTD 86


>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
           Atm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 693

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +1

Query: 271 TSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINEL 399
           TS +TVGD V+       + +    LGS++  +++   D+ +L
Sbjct: 375 TSNLTVGDLVMINQLVFQLSIPLNFLGSVYREMRQAFTDMEQL 417


>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 461

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = -2

Query: 647 SVSSTTFCDFCXSXPVRYSNCSLGFGRDXHPVLDQSVLVYNTIQISTXMWDPTL 486
           SV+ +  C+   S P+  +NC+  F +  HPV D  V V N    +T   D T+
Sbjct: 150 SVNVSAACNNV-SAPLIANNCAPSFYQSRHPVAD--VPVTNNTATTTSETDNTI 200


>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
           Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1001

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 26/85 (30%), Positives = 42/85 (49%)
 Frame = +1

Query: 298 VLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIYIPKGINVPSLARGG*LGNLTH 477
           VL+T K     L P +  +IFD +QR L +++ +    +  KG++   L     L  L  
Sbjct: 161 VLQTLKQKYDGLLPHLYPAIFDELQRSLSEVSNMDNPSF-SKGLHTLHL-----LECLVD 214

Query: 478 LNVKVGSHIXVEICMVLYTRTLWSS 552
           +N   GS + + IC  L +R L S+
Sbjct: 215 INQASGSDLGI-ICNAL-SRILTSN 237


>SPBC19C2.11c |||mitochondrial outer membrane protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 168 DIFSAVTTGPDTAKTYPNLSSFSSLAIVLK 79
           D    +  GP   +T+PN+ S +SLA+  K
Sbjct: 244 DTHLPIKMGPLDVQTHPNIRSIASLALSRK 273


>SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = -3

Query: 325 LTKAFQYGVLDHLQLHLKFLRIPGGGXV--TFKTYNLTDE 212
           L K  Q  VLD     +K+LRIP  G     F  Y L+ E
Sbjct: 320 LAKPAQKMVLDQADFLMKYLRIPKEGLYYRNFGLYKLSPE 359


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,745,188
Number of Sequences: 5004
Number of extensions: 55832
Number of successful extensions: 169
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)