Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0831
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20291| Best HMM Match : ATP-synt_ab (HMM E-Value=0)                 45   6e-05
SB_44807| Best HMM Match : Voltage_CLC (HMM E-Value=0.0094)            31   0.81 
SB_40601| Best HMM Match : VWA_CoxE (HMM E-Value=6.3)                  28   7.5  
SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11)         28   7.5  
SB_46088| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_20291| Best HMM Match : ATP-synt_ab (HMM E-Value=0)
          Length = 475

 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 17/28 (60%), Positives = 22/28 (78%)
 Frame = +3

Query: 510 GDLYGIVHENTLVKHRMXVPPKAKGTVT 593
           GD+YG V ENT +KH + + PKAKGT+T
Sbjct: 8   GDIYGYVQENTFIKHHIMLHPKAKGTIT 35


>SB_44807| Best HMM Match : Voltage_CLC (HMM E-Value=0.0094)
          Length = 142

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +1

Query: 328 ELGPGILGSIFDGIQRPLKD--INELTQSIYIPKGINVPSLARGG*LGNLTHLNVK 489
           E GPG+L +++  +   L    I   T  I +P G+ +PS+A G  +G +  + V+
Sbjct: 83  EAGPGVLKAVWQLLLAALFKLIITVFTFGIKVPAGLFIPSMAIGACIGRIIGIGVE 138


>SB_40601| Best HMM Match : VWA_CoxE (HMM E-Value=6.3)
          Length = 666

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 18/54 (33%), Positives = 24/54 (44%)
 Frame = -3

Query: 322 TKAFQYGVLDHLQLHLKFLRIPGGGXVTFKTYNLTDEFIVTDTDQLVHSRSGHL 161
           TK  Q+G     +LH+  LRIPG        YN      VT++    +  SG L
Sbjct: 492 TKTIQFG---QRRLHIPLLRIPGSLLCPVAAYNNMIRLQVTESCTKANKLSGFL 542


>SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 390

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 289 GDPVLRTGKPLSVELGPGILGSIFDGIQRPL 381
           GD V RTG  + V +G  +LG + D +  P+
Sbjct: 24  GDIVKRTGAIVDVPVGEELLGRVVDALGNPI 54


>SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11)
          Length = 1692

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -2

Query: 365 PSKMEPKIPGPSSTDKGFPVRSTGSPTVTPEVSS 264
           P+   P IP  S    G+P  +TG PT  P  SS
Sbjct: 315 PTTGIPVIPQSSVLTPGYPSANTGYPTAIPGYSS 348


>SB_46088| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3306

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = -1

Query: 447 GQGRHVDTLGDVDGLSQLVDVLEGTLNTVKDGTQD 343
           G   H+  LGD     Q +  L G LNTV    QD
Sbjct: 480 GAETHLSNLGDAPSGKQELHALNGVLNTVDKHHQD 514


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,289,820
Number of Sequences: 59808
Number of extensions: 454125
Number of successful extensions: 993
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)