Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0831
         (648 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   5.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   5.9  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   7.8  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        21   7.8  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +2

Query: 122 YVFAVSGPVVTAEKMSGSAMYELVRVGYNELVGEIIRLEGDXAT 253
           Y+F   G V  A        YE+ R    +L+ EI+  E D  T
Sbjct: 407 YLFLAVGIVGGACSDVEQNFYEVARNKKKDLLKEILERENDSGT 450


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
 Frame = -1

Query: 468 IPQSTSPGQGRHVDT--LGDVDGLSQLVDVLEGTLNT--VKDGTQDTGTKFY*QRLSSTE 301
           +P  T  G GRH++   + + D   Q ++   G  +   ++ GT   G KF+  R S++ 
Sbjct: 199 VPMPTLKGDGRHMEVIKIKNFDNCDQRINYHFGMTDNSRLEPGTNKNG-KFF-SRSSTSR 256

Query: 300 YWITYS 283
             I+ S
Sbjct: 257 IVISES 262


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +1

Query: 337 PGILGSIFDGIQRPLKDINELTQSIY 414
           PGILG IF  +   L        S+Y
Sbjct: 338 PGILGGIFGALMAALATEASYDYSLY 363


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 177 ADPDIFSAVTTGPDTAKTYPNLSS 106
           A+P    A TT P TA    +LS+
Sbjct: 22  ANPGTIQACTTSPATASLESSLSA 45


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,706
Number of Sequences: 438
Number of extensions: 4413
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)