Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0831
(648 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g78900.1 68414.m09198 vacuolar ATP synthase catalytic subunit... 103 1e-22
At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondria... 40 0.002
At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,... 40 0.002
At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondria... 40 0.002
At5g19400.1 68418.m02312 expressed protein 29 3.5
At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putati... 28 6.1
At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putati... 28 6.1
At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATP... 28 6.1
At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putati... 28 6.1
At1g20260.1 68414.m02529 vacuolar ATP synthase subunit B, putati... 28 6.1
At5g62760.2 68418.m07879 nuclear protein ZAP-related similar to ... 27 8.1
At5g62760.1 68418.m07878 nuclear protein ZAP-related similar to ... 27 8.1
At3g26030.1 68416.m03242 serine/threonine protein phosphatase 2A... 27 8.1
At3g01040.1 68416.m00005 glycosyl transferase family 8 protein c... 27 8.1
>At1g78900.1 68414.m09198 vacuolar ATP synthase catalytic subunit A
/ V-ATPase A subunit / vacuolar proton pump alpha
subunit / V-ATPase 69 kDa subunit identical to SP|O23654
Vacuolar ATP synthase catalytic subunit A (EC 3.6.3.14)
(V-ATPase A subunit) (Vacuolar proton pump alpha
subunit) (V-ATPase 69 kDa subunit) {Arabidopsis
thaliana}
Length = 623
Score = 103 bits (247), Expect = 1e-22
Identities = 46/63 (73%), Positives = 56/63 (88%)
Frame = +1
Query: 256 QVYEETSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIYIPKGINV 435
QVYEET+G+TV DPVLRT KPLSVELGPGILG+IFDGIQRPLK I ++ +YIP+G++V
Sbjct: 68 QVYEETAGLTVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIARISGDVYIPRGVSV 127
Query: 436 PSL 444
P+L
Sbjct: 128 PAL 130
Score = 81.8 bits (193), Expect = 4e-16
Identities = 38/60 (63%), Positives = 47/60 (78%)
Frame = +2
Query: 74 GGLRTIANEENEERFGYVFAVSGPVVTAEKMSGSAMYELVRVGYNELVGEIIRLEGDXAT 253
G L T ++E E +GYV VSGPVV A+ M+G+AMYELVRVG++ L+GEIIRLEGD AT
Sbjct: 7 GKLTTFEDDEKESEYGYVRKVSGPVVVADGMAGAAMYELVRVGHDNLIGEIIRLEGDSAT 66
Score = 37.1 bits (82), Expect = 0.010
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +3
Query: 510 GDLYGIVHENTLVKHRMXVPPKAKGTVT 593
GDLY V ENTL+ H + +PP A G +T
Sbjct: 152 GDLYATVFENTLMNHLVALPPDAMGKIT 179
>At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondrial
identical to SP|P83484 ATP synthase beta chain 2,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452187|dbj|AK118582.1|
Length = 556
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/58 (32%), Positives = 31/58 (53%)
Frame = +1
Query: 271 TSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIYIPKGINVPSL 444
T G+ G VL TG P++V +G LG I + + P+ + E+ Y+P + P+L
Sbjct: 141 TEGLVRGRKVLNTGAPITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAPAL 198
>At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,
putative strong similarity to SP|P83483 ATP synthase
beta chain 1, mitochondrial precursor (EC 3.6.3.14)
{Arabidopsis thaliana}, SP|P17614 ATP synthase beta
chain, mitochondrial precursor (EC 3.6.3.14) {Nicotiana
plumbaginifolia}; contains Pfam profiles PF00006: ATP
synthase alpha/beta family nucleotide-binding domain,
PF00306: ATP synthase ab C terminal, PF02874: ATP
synthase alpha/beta family beta-barrel domain
Length = 559
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/58 (32%), Positives = 31/58 (53%)
Frame = +1
Query: 271 TSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIYIPKGINVPSL 444
T G+ G VL TG P++V +G LG I + + P+ + E+ Y+P + P+L
Sbjct: 144 TEGLVRGRKVLNTGAPITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAPAL 201
>At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondrial
identical to SP|P83483 ATP synthase beta chain 1,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452102|dbj|AK118538.1|
Length = 556
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/58 (32%), Positives = 31/58 (53%)
Frame = +1
Query: 271 TSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIYIPKGINVPSL 444
T G+ G VL TG P++V +G LG I + + P+ + E+ Y+P + P+L
Sbjct: 141 TEGLVRGRKVLNTGAPITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAPAL 198
>At5g19400.1 68418.m02312 expressed protein
Length = 1093
Score = 28.7 bits (61), Expect = 3.5
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -3
Query: 478 NGLNSPVNLPWPGK 437
NGLN P N P+PGK
Sbjct: 998 NGLNGPANFPFPGK 1011
>At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +1
Query: 256 QVYEETSGVTVGDPVLR-TGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIYI 417
QV+E TSG+ ++ TG+ L + +LG IF+G +P+ + + Y+
Sbjct: 70 QVFEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYL 124
>At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +1
Query: 256 QVYEETSGVTVGDPVLR-TGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIYI 417
QV+E TSG+ ++ TG+ L + +LG IF+G +P+ + + Y+
Sbjct: 70 QVFEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYL 124
>At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATPase
B subunit / vacuolar proton pump B subunit / V-ATPase 57
kDa subunit identical to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}
Length = 486
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +1
Query: 256 QVYEETSGVTVGDPVLR-TGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIYI 417
QV+E TSG+ ++ TG+ L + +LG IF+G +P+ + + Y+
Sbjct: 69 QVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYL 123
>At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
strong similarity to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 485
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +1
Query: 256 QVYEETSGVTVGDPVLR-TGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIYI 417
QV+E TSG+ ++ TG+ L + +LG IF+G +P+ + + Y+
Sbjct: 69 QVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYL 123
>At1g20260.1 68414.m02529 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
strong similarity to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 330
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +1
Query: 256 QVYEETSGVTVGDPVLR-TGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIYI 417
QV+E TSG+ ++ TG+ L + +LG IF+G +P+ + + Y+
Sbjct: 69 QVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYL 123
>At5g62760.2 68418.m07879 nuclear protein ZAP-related similar to
nuclear protein ZAP, Mus musculus, EMBL:AB033168 this
cDNA provides a truncated ORF likely due to a skipped
exon. An alternative ORF is provided.
Length = 383
Score = 27.5 bits (58), Expect = 8.1
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -2
Query: 365 PSKMEPKIPGPSSTDKG-FPVRSTGSPTVTPEVSSY 261
P + P P PSS FPV + SPT+ P SSY
Sbjct: 204 PLPVSPPPPLPSSHPSSLFPVTTNSSPTIPPS-SSY 238
>At5g62760.1 68418.m07878 nuclear protein ZAP-related similar to
nuclear protein ZAP, Mus musculus, EMBL:AB033168 this
cDNA provides a truncated ORF likely due to a skipped
exon. An alternative ORF is provided.
Length = 661
Score = 27.5 bits (58), Expect = 8.1
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -2
Query: 365 PSKMEPKIPGPSSTDKG-FPVRSTGSPTVTPEVSSY 261
P + P P PSS FPV + SPT+ P SSY
Sbjct: 204 PLPVSPPPPLPSSHPSSLFPVTTNSSPTIPPS-SSY 238
>At3g26030.1 68416.m03242 serine/threonine protein phosphatase 2A
(PP2A) regulatory subunit B', putative similar to
SWISS-PROT:Q28653 serine/threonine protein phosphatase
2A, 56 kDa regulatory subunit, delta isoform (PP2A, B
subunit, B' delta isoform, PP2A, B subunit, B56 delta
isoform, PP2A, B subunit, PR61 delta isoform, PP2A, B
subunit, R5 delta isoform, PP2A, B subunit, B'-gamma)
[Oryctolagus cuniculus]; contains Pfam domain, PF01603:
Protein phosphatase 2A regulatory B subunit (B56 family)
Length = 477
Score = 27.5 bits (58), Expect = 8.1
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +1
Query: 250 HHQVYEETSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINEL 399
H +T + D + TGK + +LGSI +G PLK+ ++L
Sbjct: 231 HRPFIRKTMNNILYDFIFETGKHSGIAEFLEVLGSIINGFALPLKEEHKL 280
>At3g01040.1 68416.m00005 glycosyl transferase family 8 protein
contains Pfam profile: PF01501 glycosyl transferase
family 8
Length = 533
Score = 27.5 bits (58), Expect = 8.1
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +1
Query: 331 LGPGILGSIFDGIQRPLKDINELTQSI---YIPKGINVP 438
LGP +LG I D QR ++D ++ + IP G+ +P
Sbjct: 77 LGPRLLGRIDDSEQRLVRDFYKILNEVSTQEIPDGLKLP 115
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,810,918
Number of Sequences: 28952
Number of extensions: 313434
Number of successful extensions: 847
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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