Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0828
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    25   7.1  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    25   9.4  
SPBC16A3.06 |||tRNA specific adenosine deaminase |Schizosaccharo...    25   9.4  

>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 19/58 (32%), Positives = 29/58 (50%)
 Frame = -2

Query: 350 FSPS*LSSELIQYGQDRPKTFRLLYVKSCLRQETLIELLNFALIYSIWRACEQDNSIG 177
           FS S LSS +I+     PKT     +  CL+  T +E L+   +++    C Q N +G
Sbjct: 660 FSESSLSSPIIE----EPKT-----LIDCLKNFTHVEELSGENMFACENCCNQPNEVG 708


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +3

Query: 609  KHSHSLLITLYW 644
            +H+H+LLI LYW
Sbjct: 1096 EHTHTLLICLYW 1107


>SPBC16A3.06 |||tRNA specific adenosine deaminase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +2

Query: 527 YXKSLIDAIWTNSYYNVLNSEPLCVCEKAF 616
           + KS  D +    Y ++LNS+   +CE  +
Sbjct: 197 WSKSCTDKLAAKQYLSILNSQTSLICEPIY 226


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,331,944
Number of Sequences: 5004
Number of extensions: 40969
Number of successful extensions: 104
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)