Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0824
(698 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g15930.1 68417.m02419 dynein light chain, putative similar to... 73 2e-13
At1g23220.1 68414.m02904 dynein light chain type 1 family protei... 52 4e-07
At5g20110.1 68418.m02394 dynein light chain, putative similar to... 49 3e-06
At4g27360.1 68417.m03927 dynein light chain, putative similar to... 48 5e-06
At1g52250.1 68414.m05895 dynein light chain type 1 family protei... 46 2e-05
At3g16120.1 68416.m02036 dynein light chain, putative similar to... 44 1e-04
At5g61730.1 68418.m07746 ABC transporter family protein contains... 31 0.97
At1g05450.2 68414.m00553 protease inhibitor/seed storage/lipid t... 28 5.2
>At4g15930.1 68417.m02419 dynein light chain, putative similar to
dynein light chain 2 [Mus musculus] GI:15545995;
contains Pfam profile PF01221: Dynein light chain type 1
Length = 103
Score = 72.9 bits (171), Expect = 2e-13
Identities = 30/35 (85%), Positives = 32/35 (91%)
Frame = +2
Query: 257 HCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKSG 361
HCIVGRNFGSYVTHET HF+YFYL Q A+LLFKSG
Sbjct: 69 HCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG 103
Score = 66.1 bits (154), Expect = 2e-11
Identities = 31/61 (50%), Positives = 46/61 (75%)
Frame = +3
Query: 105 RKAVIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPTGIASWVVILA 284
++AVIK+ADM ++MQ++A++ A A EK+++EKDIA IKKEFDKK+ A+W I+
Sbjct: 18 KRAVIKSADMKDDMQKEAIEIAISAFEKYSVEKDIAENIKKEFDKKHG----ATWHCIVG 73
Query: 285 R 287
R
Sbjct: 74 R 74
>At1g23220.1 68414.m02904 dynein light chain type 1 family protein
similar to SP|O02414 Dynein light chain LC6, flagellar
outer arm {Anthocidaris crassispina}; contains Pfam
profile PF01221: Dynein light chain type 1
Length = 129
Score = 52.0 bits (119), Expect = 4e-07
Identities = 21/34 (61%), Positives = 27/34 (79%)
Frame = +2
Query: 257 HCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKS 358
HCIVG +FGSYVTH T F+YF + +V +LLFK+
Sbjct: 88 HCIVGTSFGSYVTHSTGGFLYFQIDKVYVLLFKT 121
Score = 27.5 bits (58), Expect = 9.0
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Frame = +3
Query: 60 VHLSKQKQTQDKMCDRKAVIKNADMSEEMQQDAVDCATQALEKFNIEKD---IAAFIKKE 230
+ K K+ QD+ + ++ +DM Q A + + L + D +A +KK+
Sbjct: 19 IQKKKAKEQQDQKDEFNVRVRASDMPLPQQNRAFSLSREILNATPGKADNKRLAHALKKD 78
Query: 231 FDKKYNP 251
FD Y P
Sbjct: 79 FDSAYGP 85
>At5g20110.1 68418.m02394 dynein light chain, putative similar to
SP|O02414 Dynein light chain LC6, flagellar outer arm
{Anthocidaris crassispina}; contains Pfam profile
PF01221: Dynein light chain type 1
Length = 209
Score = 49.2 bits (112), Expect = 3e-06
Identities = 20/34 (58%), Positives = 27/34 (79%)
Frame = +2
Query: 257 HCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKS 358
HCIVG +FGS+VTH T FIYF + ++ +LLFK+
Sbjct: 168 HCIVGSSFGSFVTHSTGCFIYFSMDKLYVLLFKT 201
Score = 34.7 bits (76), Expect = 0.060
Identities = 22/45 (48%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Frame = +3
Query: 126 ADMSEEMQQDAVDCATQ---ALEKFNIEKDIAAFIKKEFDKKYNP 251
ADM MQ A CA +LEKF+ K +A +KKEFDK Y P
Sbjct: 122 ADMPGFMQAHAFRCARMTLDSLEKFS-SKHMAFNLKKEFDKGYGP 165
>At4g27360.1 68417.m03927 dynein light chain, putative similar to
SP|O02414 Dynein light chain LC6, flagellar outer arm
{Anthocidaris crassispina}; contains Pfam profile
PF01221: Dynein light chain type 1
Length = 103
Score = 48.4 bits (110), Expect = 5e-06
Identities = 23/52 (44%), Positives = 37/52 (71%), Gaps = 2/52 (3%)
Frame = +3
Query: 96 MCDRKAVIKNADMSEEMQQDAVDCATQALEKFNIEK--DIAAFIKKEFDKKY 245
M + KAV+ + DM + M++DA+ A++AL+ F++ + IA FIKKEFD+ Y
Sbjct: 1 MLEGKAVMGDTDMKQTMKEDALSLASKALDCFDVTEPTQIARFIKKEFDRSY 52
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/32 (59%), Positives = 25/32 (78%)
Frame = +2
Query: 260 CIVGRNFGSYVTHETRHFIYFYLGQVAILLFK 355
CIVG +FGS+VTH + FI+F +G + ILLFK
Sbjct: 58 CIVGTHFGSFVTHCSGCFIHFSVGSLTILLFK 89
>At1g52250.1 68414.m05895 dynein light chain type 1 family protein
similar to SP|O02414 Dynein light chain LC6, flagellar
outer arm {Anthocidaris crassispina}; contains Pfam
profile PF01221: Dynein light chain type 1
Length = 94
Score = 46.4 bits (105), Expect = 2e-05
Identities = 23/52 (44%), Positives = 37/52 (71%), Gaps = 2/52 (3%)
Frame = +3
Query: 96 MCDRKAVIKNADMSEEMQQDAVDCATQALEKFNIE--KDIAAFIKKEFDKKY 245
M + KA+++++DM +MQ A+ A+QAL+ F++ K IA IKKEFD++Y
Sbjct: 1 MLEGKAMVEDSDMPVKMQMQAMAFASQALDLFDVFDCKSIAGHIKKEFDERY 52
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/36 (47%), Positives = 21/36 (58%)
Frame = +2
Query: 260 CIVGRNFGSYVTHETRHFIYFYLGQVAILLFKSG*T 367
C+VG NFG + TH FIYF L + L+FK T
Sbjct: 58 CVVGSNFGCFFTHSKGTFIYFQLETLKFLIFKGAST 93
>At3g16120.1 68416.m02036 dynein light chain, putative similar to
SP|O02414 Dynein light chain LC6, flagellar outer arm
{Anthocidaris crassispina}; contains Pfam profile
PF01221: Dynein light chain type 1
Length = 93
Score = 43.6 bits (98), Expect = 1e-04
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 2/52 (3%)
Frame = +3
Query: 96 MCDRKAVIKNADMSEEMQQDAVDCATQALEKFNI--EKDIAAFIKKEFDKKY 245
M + KA ++ DM +MQ A+ A+Q+L+ F++ IAA IKKEFD++Y
Sbjct: 1 MLEGKAKVEETDMPVKMQMQAMKIASQSLDLFDVFDSISIAAHIKKEFDERY 52
Score = 43.6 bits (98), Expect = 1e-04
Identities = 17/32 (53%), Positives = 22/32 (68%)
Frame = +2
Query: 260 CIVGRNFGSYVTHETRHFIYFYLGQVAILLFK 355
C+VG NFG + TH FIYF+LG + L+FK
Sbjct: 58 CVVGTNFGCFFTHSKGTFIYFHLGTLNFLIFK 89
>At5g61730.1 68418.m07746 ABC transporter family protein contains
Pfam profile: PF00005 ABC transporter
Length = 940
Score = 30.7 bits (66), Expect = 0.97
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = +1
Query: 517 WCER-FSSECESGCTVFTYTVY--LIGNSQCWTLTASYLFTLVPGACGV 654
W ER + ES C + T +Y L+G W + A Y ++P A GV
Sbjct: 404 WSERAICAGGESTCVITTNKIYIWLVGTFFFWFVLALYFDNIIPNASGV 452
>At1g05450.2 68414.m00553 protease inhibitor/seed storage/lipid
transfer protein (LTP)-related similar to geranyl
diphosphate synthase large subunit [Mentha x piperita]
GI:6449052
Length = 205
Score = 28.3 bits (60), Expect = 5.2
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Frame = -2
Query: 235 SNSFLMNAAMSFSML--NFSSA*VAQSTASCCISSLMS 128
SNSFL++AA+ FS+L N ++ +AQ C S L S
Sbjct: 3 SNSFLISAALIFSLLSSNSPTSILAQINTPCSPSMLSS 40
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,676,497
Number of Sequences: 28952
Number of extensions: 289953
Number of successful extensions: 791
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -