Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0823
(648 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015 38 0.007
01_01_0227 + 1933247-1933699 34 0.085
12_02_0136 + 14109557-14109661,14109742-14109804 33 0.26
05_03_0545 - 15244647-15245147,15245342-15245635 31 0.60
07_01_1127 + 10456895-10457388,10457488-10458112 29 3.2
09_06_0356 - 22498300-22498350,22499251-22499425,22499543-22500786 29 4.2
09_03_0036 + 11772940-11773171,11774995-11775104 29 4.2
04_01_0252 - 3329712-3331061 29 4.2
03_05_1019 + 29736644-29736709,29737156-29737515,29737595-297377... 29 4.2
04_04_0621 - 26658204-26658373,26658568-26658649,26658765-26658776 28 5.6
03_01_0491 + 3720842-3720958,3721904-3723109 28 5.6
11_06_0151 - 20643032-20643085,20643202-20643307,20643415-206434... 27 9.7
11_06_0022 + 19321886-19321918,19323059-19323131,19323587-193236... 27 9.7
09_06_0096 - 20840855-20841994 27 9.7
>03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015
Length = 327
Score = 37.9 bits (84), Expect = 0.007
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 10/96 (10%)
Frame = +2
Query: 248 PWPSIKSDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQ------HGYISRQ 409
PW ++ DK+ ++ D+ + EE+ V D +V+ G+H++++ + G+ +
Sbjct: 134 PWDVMEDDKE-VRMRFDMPGLSREEVKVMVEDDALVIRGEHKKEEGEGAEGSGDGWWKER 192
Query: 410 ----FTRRYALPXGCTAESVESRLSSDGVLSVIAPR 505
+ R ALP C V + L +GVL V P+
Sbjct: 193 SVSSYDMRLALPDECDKSKVRAEL-KNGVLLVTVPK 227
>01_01_0227 + 1933247-1933699
Length = 150
Score = 34.3 bits (75), Expect = 0.085
Identities = 17/51 (33%), Positives = 30/51 (58%)
Frame = +2
Query: 356 VEGKHEEKKDQHGYISRQFTRRYALPXGCTAESVESRLSSDGVLSVIAPRK 508
V+GK++E+ S +F RR+ LP G + V + + +GVL+V P++
Sbjct: 87 VDGKNDERWHHVERSSGKFQRRFRLPRGARVDQVSASM-DNGVLTVTVPKE 136
>12_02_0136 + 14109557-14109661,14109742-14109804
Length = 55
Score = 32.7 bits (71), Expect = 0.26
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +3
Query: 189 PPCEQRILPPVGHLAAAARD 248
PPC +R+LPP+ HL AR+
Sbjct: 8 PPCRRRLLPPIAHLLPHARE 27
>05_03_0545 - 15244647-15245147,15245342-15245635
Length = 264
Score = 31.5 bits (68), Expect = 0.60
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = -2
Query: 371 RVCLQPRCSRPPF*QRFLPGRNAGR 297
R CLQPR SRPP ++F GR+ R
Sbjct: 221 RDCLQPRQSRPPHYRQFTRGRHPNR 245
>07_01_1127 + 10456895-10457388,10457488-10458112
Length = 372
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -2
Query: 371 RVCLQPRCSRPPF*QRFLPGRNAGR 297
R CLQPR SRPP ++F R+ R
Sbjct: 329 RDCLQPRQSRPPHYRQFTRSRHPNR 353
>09_06_0356 - 22498300-22498350,22499251-22499425,22499543-22500786
Length = 489
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +3
Query: 318 KKSLLKRRTATSWLKANTRRRKISMVTYRVNS 413
KKS T TS K TRRRK+++V Y S
Sbjct: 16 KKSAAGELTTTSEKKKKTRRRKVAVVYYLCRS 47
>09_03_0036 + 11772940-11773171,11774995-11775104
Length = 113
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 316 GRNLC*NGGRLHRG*RQTRGEERSAWLH 399
G+NL G+ H G R+ RG+ER LH
Sbjct: 21 GQNLMDRRGKRHEGRRERRGKERGRNLH 48
>04_01_0252 - 3329712-3331061
Length = 449
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -2
Query: 371 RVCLQPRCSRPPF*QRFLPGRNAGR 297
R CLQPR +RPP ++F R++ R
Sbjct: 406 RDCLQPRQNRPPHYRQFTRSRHSNR 430
>03_05_1019 +
29736644-29736709,29737156-29737515,29737595-29737735,
29737912-29738044,29738344-29738457,29738553-29738701,
29740815-29740907,29741019-29741079,29741180-29741512,
29742149-29742224,29742322-29742421,29743300-29743369,
29743987-29744082,29744355-29744402,29744427-29744658,
29745186-29745246,29745265-29745375
Length = 747
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 221 GSPCCRGSRPWPSIKSDKDKFQVNLDVQHFAPEEISV 331
G C +GS PS+ D + D QH AP E+S+
Sbjct: 617 GYTCQKGSAILPSLSMCHDVLVRDADGQHCAPSELSI 653
>04_04_0621 - 26658204-26658373,26658568-26658649,26658765-26658776
Length = 87
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 499 TQEVPPAVEGERKIPIAQTGPVRKEVKDQSNGDK 600
T E+ ++ K+ I GP ++E KD GDK
Sbjct: 53 TVEIAKKLKKFGKVDIISVGPAKEEKKDDKKGDK 86
>03_01_0491 + 3720842-3720958,3721904-3723109
Length = 440
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -1
Query: 201 AHKGAGCSTEKIFRSQPQAEMLIHEATRTLNFV 103
A G GC K+F S+ +A+ H A +L F+
Sbjct: 391 ADHGRGCKLAKVFESKDEAKASTHTAISSLPFM 423
>11_06_0151 -
20643032-20643085,20643202-20643307,20643415-20643495,
20643588-20643715,20643829-20643903,20644853-20645374,
20646622-20646687,20647990-20648076,20648173-20648247,
20648705-20648821,20648932-20649015,20649152-20649217,
20649352-20649417,20650079-20650150,20650231-20650332,
20650428-20650605,20650700-20650755,20653159-20653269,
20653354-20653422,20653558-20653741,20653826-20653914,
20654070-20654147,20654509-20654631,20654755-20654874,
20654975-20655055,20655285-20655431,20655533-20655611,
20657114-20657223,20659138-20659236,20659467-20659582,
20659673-20659781,20659839-20660069,20660152-20660417,
20661349-20661506,20661601-20661751,20661897-20661966,
20662203-20662232
Length = 1451
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +2
Query: 263 KSDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGY 397
+SDKDK N+D + A E + V+ E K +EK + H Y
Sbjct: 502 ESDKDKIMCNVDEKDIA-EHLRVRLKKEQEEKEHKKKEKAEAHLY 545
>11_06_0022 +
19321886-19321918,19323059-19323131,19323587-19323680,
19324383-19324499,19324584-19324641,19324713-19325114
Length = 258
Score = 27.5 bits (58), Expect = 9.7
Identities = 21/46 (45%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 416 RRYALPXGCTAESVESRLSSDGVLSV-IAPRKCRQQWRVNARFRSP 550
RR ALP G E+ ESR S V S I+PR R + R R R P
Sbjct: 105 RRKALPNGSDPENEESRSSKMAVRSANISPRG-RGRGRGRGRGRPP 149
>09_06_0096 - 20840855-20841994
Length = 379
Score = 27.5 bits (58), Expect = 9.7
Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Frame = +3
Query: 213 PPV---GHLAAAARDLGPASKVIRXXXXXXXXXXXXPRKKSL 329
PPV GHLAAAA L P S+V+ PR SL
Sbjct: 322 PPVPHHGHLAAAAAALLPCSRVVSAATSPAAGPPLPPRTVSL 363
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,359,737
Number of Sequences: 37544
Number of extensions: 416234
Number of successful extensions: 1231
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1231
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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