Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0823
         (648 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g53540.1 68414.m06074 17.6 kDa class I small heat shock prote...    40   0.001
At2g29500.1 68415.m03583 17.6 kDa class I small heat shock prote...    34   0.071
At1g78910.1 68414.m09199 pseudouridine synthase family protein l...    29   2.0  
At1g73710.1 68414.m08535 pentatricopeptide (PPR) repeat-containi...    28   4.7  
At4g13700.1 68417.m02128 serine/threonine protein phosphatase fa...    28   6.1  

>At1g53540.1 68414.m06074 17.6 kDa class I small heat shock protein
           (HSP17.6C-CI) (AA 1-156) identical to (17.6 kDa class I
           heat shock protein (HSP 17.6) (AA 1-156)(SP:P13853)
           (GI:4376161) (Arabidopsis thaliana) (Nucleic Acids Res.
           17 (19), 7995 (1989))
          Length = 157

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 8/78 (10%)
 Frame = +2

Query: 296 DVQHFAPEEISVKTADGYIV-VEGK----HEEKKDQHGYISR---QFTRRYALPXGCTAE 451
           D+     EE+ V+  DG I+ + G+    +EEK D+   + R   +FTRR+ LP     E
Sbjct: 66  DLPGLRKEEVKVEVEDGNILQISGERSNENEEKNDKWHRVERSSGKFTRRFRLPENAKME 125

Query: 452 SVESRLSSDGVLSVIAPR 505
            +++ +  +GVLSV  P+
Sbjct: 126 EIKASM-ENGVLSVTVPK 142


>At2g29500.1 68415.m03583 17.6 kDa class I small heat shock protein
           (HSP17.6B-CI) contains Pfam PF00011: Hsp20/alpha
           crystallin family; identified in Scharf, K-D., et al,
           Cell Stress & Chaperones (2001) 6: 225-237.
          Length = 153

 Score = 34.3 bits (75), Expect = 0.071
 Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 8/78 (10%)
 Frame = +2

Query: 296 DVQHFAPEEISVKTA-DGYIVVEG-KHEEKKDQHGYISR------QFTRRYALPXGCTAE 451
           D+     EE+ V+   D  + + G +H EK+D++    R      QFTRR+ LP     +
Sbjct: 62  DLPGLKKEEVKVEIEEDSVLKISGERHVEKEDKNDTWHRVERSSGQFTRRFRLPENVKMD 121

Query: 452 SVESRLSSDGVLSVIAPR 505
            V++ +  +GVL+V  P+
Sbjct: 122 QVKAAM-ENGVLTVTVPK 138


>At1g78910.1 68414.m09199 pseudouridine synthase family protein low
           similarity to SP|P23851 Ribosomal large subunit
           pseudouridine synthase C (EC 4.2.1.70) (Pseudouridylate
           synthase) (Uracil hydrolyase) {Escherichia coli};
           contains Pfam profile PF00849: RNA pseudouridylate
           synthase
          Length = 478

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 23/59 (38%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
 Frame = -2

Query: 461 TPQIQPYSXPAKRSDE*IDAICNHADLSSPRVCLQPR--CSRPPF*QRFLPGRNAGRPG 291
           T  I+ YS  A      I    N A L  P+    PR   S PPF    LPG+NAG  G
Sbjct: 14  TVLIRRYSRVAPPPSSVIRVTNNVAHLGPPKQGPLPRQLISLPPFPGHPLPGKNAGADG 72


>At1g73710.1 68414.m08535 pentatricopeptide (PPR) repeat-containing
           protein low similarity to fertility restorer [Petunia x
           hybrida] GI:22128587, post-transcriptional control of
           chloroplast gene expression CRP1 [Zea mays] GI:3289002;
           contains Pfam profile PF01535: PPR repeat
          Length = 991

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = -2

Query: 482 HHLKTAGTPQIQPYSXPAKRSDE*IDAICNHADLSSPRVCLQPRCSRP 339
           HHL  +   ++ P S P   S      +  H   SS      PRCS+P
Sbjct: 26  HHLALSSKARVFPLSLPCNFSSRVSFKLQLHCAASSSSSVSPPRCSKP 73


>At4g13700.1 68417.m02128 serine/threonine protein phosphatase
           family protein contains Pfam domain PF00149: Ser/Thr
           protein phosphatase
          Length = 474

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 19/72 (26%), Positives = 33/72 (45%)
 Frame = +2

Query: 218 RGSPCCRGSRPWPSIKSDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGY 397
           +G PC   S P   I+   + +Q   D      E ++ K     +V+EG HE +    G 
Sbjct: 240 KGVPCFSCSFPDAPIR---ETYQPRWDAWGRFMEPLTSKVPT--MVIEGNHEIEPQASGI 294

Query: 398 ISRQFTRRYALP 433
             + ++ R+A+P
Sbjct: 295 TFKSYSERFAVP 306


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,887,244
Number of Sequences: 28952
Number of extensions: 292737
Number of successful extensions: 795
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)