Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0822
         (295 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7410| Best HMM Match : 7tm_1 (HMM E-Value=2.4e-22)                  29   0.86 
SB_13646| Best HMM Match : SBP56 (HMM E-Value=5.3e-14)                 27   2.0  
SB_20218| Best HMM Match : Xan_ur_permease (HMM E-Value=0.035)         26   6.0  
SB_13629| Best HMM Match : Extensin_2 (HMM E-Value=0.35)               26   6.0  
SB_28221| Best HMM Match : eRF1_3 (HMM E-Value=8.7)                    25   8.0  

>SB_7410| Best HMM Match : 7tm_1 (HMM E-Value=2.4e-22)
          Length = 341

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +1

Query: 175 PFTRAARRYVKFGNISTRVSSMTTISVSAIVMF 273
           PF+ AA +Y+ +  I+  V SM TIS  A+  F
Sbjct: 90  PFSYAACQYMGYSGIAIAVGSMQTISCIAVNRF 122


>SB_13646| Best HMM Match : SBP56 (HMM E-Value=5.3e-14)
          Length = 204

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = +1

Query: 187 AARRYVKFGNISTRVSSMTTISVSAIVMFCV 279
           ++RRYV F   +T   SMT+  V+ +V+FC+
Sbjct: 5   SSRRYVVFDGANT---SMTSPEVTKLVLFCI 32


>SB_20218| Best HMM Match : Xan_ur_permease (HMM E-Value=0.035)
          Length = 242

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 19/52 (36%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
 Frame = -2

Query: 240 HRRHPRRYVSEFNISSCSTCKW--*CTESRGRSMGRSKNRRVLHTYSYRDRS 91
           H R PR Y     ISS   C W   C     RS   S +     T S R RS
Sbjct: 5   HARDPRCYNGRVPISSPYRCDWPNGCVTEVHRSRCHSAHHHADWTCSLRGRS 56


>SB_13629| Best HMM Match : Extensin_2 (HMM E-Value=0.35)
          Length = 487

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 279 YTKHHYCTYTDGCHRRHP 226
           YT+ H  T+TDG + +HP
Sbjct: 163 YTEKHPVTHTDGYNDKHP 180


>SB_28221| Best HMM Match : eRF1_3 (HMM E-Value=8.7)
          Length = 348

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = -2

Query: 147 MGRSKNRRVLHTYSYR---DRSKG*YLKVSKFSLQR 49
           MG+ KNR V    SYR    +SK   +KV K ++ R
Sbjct: 1   MGKGKNRSVYRHSSYRTLPTKSKSLRMKVGKSNIPR 36


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,205,373
Number of Sequences: 59808
Number of extensions: 80007
Number of successful extensions: 253
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 326952314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)