Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0822
         (295 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   3.1  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    20   5.5  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    20   5.5  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    20   5.5  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    20   7.3  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          19   9.6  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    19   9.6  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.0 bits (42), Expect = 3.1
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = -3

Query: 269 ITIALTLMVVIDDTRVDMFPNLTY 198
           + +A++  +  + +R+D FPN  Y
Sbjct: 106 VCVAISSRMEYECSRIDYFPNEEY 129


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 20.2 bits (40), Expect = 5.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 222 RYVSEFNISSCST 184
           RYV E N+++C T
Sbjct: 192 RYVPEGNMTACGT 204


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 20.2 bits (40), Expect = 5.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 222 RYVSEFNISSCST 184
           RYV E N+++C T
Sbjct: 68  RYVPEGNMTACGT 80


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 20.2 bits (40), Expect = 5.5
 Identities = 6/17 (35%), Positives = 9/17 (52%)
 Frame = +3

Query: 228 GVVDDNHQCKCNSDVLC 278
           G+  +  QC CN  + C
Sbjct: 77  GICAEGMQCSCNKCIGC 93


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 19.8 bits (39), Expect = 7.3
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 88  RLIFKSIKVFTSAFL*NWYE 29
           RLI +S  V  +A+  +WY+
Sbjct: 179 RLIEESSSVMEAAYSCHWYD 198


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 19.4 bits (38), Expect = 9.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 232 SSMTTISVSAIVMFCVNK 285
           ++ TTIS   I +F VNK
Sbjct: 393 TTSTTISQKHIKVFVVNK 410


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 19.4 bits (38), Expect = 9.6
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 293 TYFLFTQNITIALTLMVVI 237
           TYF FT+   I LT   ++
Sbjct: 331 TYFTFTRPCGITLTFHEIL 349


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,807
Number of Sequences: 438
Number of extensions: 804
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5994288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)