Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0822
         (295 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g02830.1 68416.m00275 zinc finger (CCCH-type) family protein ...    26   3.8  
At2g23100.1 68415.m02756 DC1 domain-containing protein contains ...    26   5.0  
At1g69910.1 68414.m08045 protein kinase family protein contains ...    25   6.6  
At1g66450.1 68414.m07549 DC1 domain-containing protein contains ...    25   6.6  
At5g06940.1 68418.m00784 leucine-rich repeat family protein cont...    25   8.7  
At4g30440.1 68417.m04323 NAD-dependent epimerase/dehydratase fam...    25   8.7  
At1g29570.1 68414.m03616 zinc finger protein-related contains si...    25   8.7  

>At3g02830.1 68416.m00275 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 397

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 16/65 (24%), Positives = 28/65 (43%)
 Frame = -2

Query: 291 LFFIYTKHHYCTYTDGCHRRHPRRYVSEFNISSCSTCKW*CTESRGRSMGRSKNRRVLHT 112
           L   YT++  C +   C   HP R  +  N +S +      +  + R +  S+ R+   T
Sbjct: 325 LCVFYTRYGICKFGPSCKFDHPMRVFTYDNTASETDEVVETSTGKSRRLSVSETRQAATT 384

Query: 111 YSYRD 97
            S +D
Sbjct: 385 SSGKD 389


>At2g23100.1 68415.m02756 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 711

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = -2

Query: 267 HYCTYTDGC--HRRHPRRYVSEFNISSCSTCK 178
           H C ++D    H+   RR +S+  +S C  CK
Sbjct: 65  HLCPFSDPVEPHKLQRRRLLSQSQLSECFGCK 96


>At1g69910.1 68414.m08045 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 636

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -2

Query: 243 CHRRHPRRYVSEFNISSCSTCKW*C 169
           C R    R  S F + +CS C W C
Sbjct: 130 CSRLSLLRPCSPFTLPNCSRCPWDC 154


>At1g66450.1 68414.m07549 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 700

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -2

Query: 198 SSCSTCKW*CTESRGRSMGRSKNRRVLH 115
           +SCS C W CT        R   R +LH
Sbjct: 482 NSCSACPWLCTTGFFYECDREGCRFILH 509


>At5g06940.1 68418.m00784 leucine-rich repeat family protein
           contains protein kinase domain, Pfam:PF00069; contains
           leucine-rich repeats, Pfam:PF00560
          Length = 872

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 288 FFIYTKHHYCTYTDGCHRRHPRRYVSEFNISS 193
           +F  +  H+C +T     R P  YVS  N+ S
Sbjct: 53  WFNTSSSHHCNWTGITCTRAPTLYVSSINLQS 84


>At4g30440.1 68417.m04323 NAD-dependent epimerase/dehydratase family
           protein similar to nucleotide sugar epimerase from
           Vibrio vulnificus GI:3093975 [PID:g3093975], WbnF
           [Escherichia coli] GI:5739472, CAPI protein
           {Staphylococcus aureus} SP|P39858; contains Pfam profile
           PF01370 NAD dependent epimerase/dehydratase family
          Length = 429

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 290 YFLFTQNITIALTLMVVIDDTRVDMFPNLTYL 195
           YF FT+NI     + +     RVD+  + TY+
Sbjct: 280 YFSFTRNILQGKPITIYRGKNRVDLARDFTYI 311


>At1g29570.1 68414.m03616 zinc finger protein-related contains
           similarity to zinc finger proteins (CCCH type)
          Length = 321

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/30 (30%), Positives = 12/30 (40%)
 Frame = -2

Query: 279 YTKHHYCTYTDGCHRRHPRRYVSEFNISSC 190
           Y K+  C Y   C   HP +   E  +  C
Sbjct: 64  YLKNGLCRYRSSCRFNHPTQRPQELPVRIC 93


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,237,110
Number of Sequences: 28952
Number of extensions: 52526
Number of successful extensions: 131
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 271185840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)