Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0819
(698 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr... 71 1e-13
SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|... 71 1e-13
SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pomb... 71 1e-13
SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr 2|||... 53 5e-08
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 26 6.0
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 25 7.9
>SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 136
Score = 71.3 bits (167), Expect = 1e-13
Identities = 35/38 (92%), Positives = 36/38 (94%)
Frame = -1
Query: 623 QRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFE 510
QRLVREIAQDFKTDLRFQS+AIGALQEA EAYLV LFE
Sbjct: 69 QRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFE 106
Score = 57.2 bits (132), Expect = 2e-09
Identities = 25/33 (75%), Positives = 28/33 (84%)
Frame = -3
Query: 519 LVRSTNLCAIHAKRVTIMPKDIQLARRIRGERA 421
L TNLCAIH KRVTI PKD+QLARR+RGER+
Sbjct: 104 LFEDTNLCAIHGKRVTIQPKDMQLARRLRGERS 136
Score = 48.8 bits (111), Expect = 7e-07
Identities = 24/30 (80%), Positives = 26/30 (86%)
Frame = -2
Query: 697 GTVAPREIRRYQKSTELLIRKLPFPSVL*E 608
GTVA REIRRYQKSTELLIRKLPF ++ E
Sbjct: 45 GTVALREIRRYQKSTELLIRKLPFQRLVRE 74
>SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 136
Score = 71.3 bits (167), Expect = 1e-13
Identities = 35/38 (92%), Positives = 36/38 (94%)
Frame = -1
Query: 623 QRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFE 510
QRLVREIAQDFKTDLRFQS+AIGALQEA EAYLV LFE
Sbjct: 69 QRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFE 106
Score = 57.2 bits (132), Expect = 2e-09
Identities = 25/33 (75%), Positives = 28/33 (84%)
Frame = -3
Query: 519 LVRSTNLCAIHAKRVTIMPKDIQLARRIRGERA 421
L TNLCAIH KRVTI PKD+QLARR+RGER+
Sbjct: 104 LFEDTNLCAIHGKRVTIQPKDMQLARRLRGERS 136
Score = 48.8 bits (111), Expect = 7e-07
Identities = 24/30 (80%), Positives = 26/30 (86%)
Frame = -2
Query: 697 GTVAPREIRRYQKSTELLIRKLPFPSVL*E 608
GTVA REIRRYQKSTELLIRKLPF ++ E
Sbjct: 45 GTVALREIRRYQKSTELLIRKLPFQRLVRE 74
>SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 136
Score = 71.3 bits (167), Expect = 1e-13
Identities = 35/38 (92%), Positives = 36/38 (94%)
Frame = -1
Query: 623 QRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFE 510
QRLVREIAQDFKTDLRFQS+AIGALQEA EAYLV LFE
Sbjct: 69 QRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFE 106
Score = 57.2 bits (132), Expect = 2e-09
Identities = 25/33 (75%), Positives = 28/33 (84%)
Frame = -3
Query: 519 LVRSTNLCAIHAKRVTIMPKDIQLARRIRGERA 421
L TNLCAIH KRVTI PKD+QLARR+RGER+
Sbjct: 104 LFEDTNLCAIHGKRVTIQPKDMQLARRLRGERS 136
Score = 48.8 bits (111), Expect = 7e-07
Identities = 24/30 (80%), Positives = 26/30 (86%)
Frame = -2
Query: 697 GTVAPREIRRYQKSTELLIRKLPFPSVL*E 608
GTVA REIRRYQKSTELLIRKLPF ++ E
Sbjct: 45 GTVALREIRRYQKSTELLIRKLPFQRLVRE 74
>SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr
2|||Manual
Length = 120
Score = 52.8 bits (121), Expect = 5e-08
Identities = 24/30 (80%), Positives = 26/30 (86%)
Frame = -3
Query: 519 LVRSTNLCAIHAKRVTIMPKDIQLARRIRG 430
L TNLCAIHAKRVTIM +D+QLARRIRG
Sbjct: 90 LFEDTNLCAIHAKRVTIMQRDMQLARRIRG 119
Score = 41.9 bits (94), Expect = 8e-05
Identities = 19/32 (59%), Positives = 26/32 (81%)
Frame = -2
Query: 697 GTVAPREIRRYQKSTELLIRKLPFPSVL*EKS 602
GT A REIR+YQ+ST+LLI++LPF ++ E S
Sbjct: 25 GTTALREIRKYQRSTDLLIQRLPFSRIVREIS 56
Score = 40.3 bits (90), Expect = 3e-04
Identities = 24/43 (55%), Positives = 31/43 (72%), Gaps = 6/43 (13%)
Frame = -1
Query: 620 RLVREIAQDF----KTD--LRFQSAAIGALQEASEAYLVGLFE 510
R+VREI+ +F TD LR+QS A+ LQEA+EA+LV LFE
Sbjct: 50 RIVREISSEFVANFSTDVGLRWQSTALQCLQEAAEAFLVHLFE 92
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 25.8 bits (54), Expect = 6.0
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = -2
Query: 688 APREIRRYQKSTELLIRKLPF 626
APRE+++ ++ EL++ LPF
Sbjct: 340 APREVKQIEQPKELVLNLLPF 360
>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 612
Score = 25.4 bits (53), Expect = 7.9
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +3
Query: 543 LLESSDGGRLETQISFEILSD 605
L + DGG+LE Q+ +++L D
Sbjct: 72 LFTTDDGGKLELQVYYQLLVD 92
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,755,619
Number of Sequences: 5004
Number of extensions: 53138
Number of successful extensions: 125
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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