Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0819
         (698 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY035716-1|AAK61362.1|  136|Anopheles gambiae histone 3A protein.      77   4e-16
Y09952-1|CAA71083.1|  115|Anopheles gambiae histone H3 protein.        72   2e-14

>AY035716-1|AAK61362.1|  136|Anopheles gambiae histone 3A protein.
          Length = 136

 Score = 77.4 bits (182), Expect = 4e-16
 Identities = 38/38 (100%), Positives = 38/38 (100%)
 Frame = -1

Query: 623 QRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFE 510
           QRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFE
Sbjct: 69  QRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFE 106



 Score = 64.1 bits (149), Expect = 4e-12
 Identities = 30/33 (90%), Positives = 30/33 (90%)
 Frame = -3

Query: 519 LVRSTNLCAIHAKRVTIMPKDIQLARRIRGERA 421
           L   TNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 104 LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136



 Score = 48.8 bits (111), Expect = 2e-07
 Identities = 24/30 (80%), Positives = 26/30 (86%)
 Frame = -2

Query: 697 GTVAPREIRRYQKSTELLIRKLPFPSVL*E 608
           GTVA REIRRYQKSTELLIRKLPF  ++ E
Sbjct: 45  GTVALREIRRYQKSTELLIRKLPFQRLVRE 74


>Y09952-1|CAA71083.1|  115|Anopheles gambiae histone H3 protein.
          Length = 115

 Score = 72.1 bits (169), Expect = 2e-14
 Identities = 35/38 (92%), Positives = 37/38 (97%)
 Frame = -1

Query: 623 QRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFE 510
           QRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFE
Sbjct: 67  QRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFE 104



 Score = 48.8 bits (111), Expect = 2e-07
 Identities = 24/30 (80%), Positives = 26/30 (86%)
 Frame = -2

Query: 697 GTVAPREIRRYQKSTELLIRKLPFPSVL*E 608
           GTVA REIRRYQKSTELLIRKLPF  ++ E
Sbjct: 43  GTVALREIRRYQKSTELLIRKLPFQRLVRE 72



 Score = 27.1 bits (57), Expect = 0.57
 Identities = 11/14 (78%), Positives = 11/14 (78%)
 Frame = -3

Query: 519 LVRSTNLCAIHAKR 478
           L   TNLCAIHAKR
Sbjct: 102 LFEDTNLCAIHAKR 115


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 682,992
Number of Sequences: 2352
Number of extensions: 13065
Number of successful extensions: 24
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 71086350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)