Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0818
         (369 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27622| Best HMM Match : Ribosomal_S25 (HMM E-Value=0)               85   2e-17
SB_4742| Best HMM Match : Glutaredoxin (HMM E-Value=5.6e-19)           29   1.2  
SB_24593| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.6  
SB_45659| Best HMM Match : E_Pc_C (HMM E-Value=1.2)                    27   3.6  
SB_14029| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.6  
SB_14817| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.3  
SB_5008| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.3  
SB_51905| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     26   8.3  
SB_33294| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.3  
SB_6561| Best HMM Match : HEAT (HMM E-Value=0.028)                     26   8.3  

>SB_27622| Best HMM Match : Ribosomal_S25 (HMM E-Value=0)
          Length = 115

 Score = 84.6 bits (200), Expect = 2e-17
 Identities = 40/51 (78%), Positives = 44/51 (86%)
 Frame = +2

Query: 119 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALTNLGKK 271
           LNN VLFDK TY+KLYKEVP Y+LITP+VVSERLK+RGSLARRAL  L  K
Sbjct: 41  LNNLVLFDKATYDKLYKEVPSYRLITPSVVSERLKIRGSLARRALLELQSK 91



 Score = 46.8 bits (106), Expect = 5e-06
 Identities = 20/28 (71%), Positives = 24/28 (85%)
 Frame = +1

Query: 256 ELREKGLIKQVVQHHGQVIYTRATKGDD 339
           EL+ KGLIK+V +HH Q+IYTRATKG D
Sbjct: 87  ELQSKGLIKEVSKHHSQLIYTRATKGAD 114


>SB_4742| Best HMM Match : Glutaredoxin (HMM E-Value=5.6e-19)
          Length = 111

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 217 VKGPRFPGEKSTHELREKGLIKQVVQHHG 303
           VKG    G   T EL + G +KQ++Q HG
Sbjct: 77  VKGQSIGGGMETAELYQSGKLKQLLQDHG 105


>SB_24593| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1453

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 18  FGPNSLKKHRRRRKDPVAAKPRRRSGPKEK 107
           F PN+LK+ +RR  +    KP  RS  K +
Sbjct: 65  FSPNALKREKRRTTNSANRKPANRSPSKRE 94


>SB_45659| Best HMM Match : E_Pc_C (HMM E-Value=1.2)
          Length = 1244

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 174 TSLYSFSYVGLSNNTWLFNLSRTFPLDH 91
           +SL+     G+SN+ WL N S T P++H
Sbjct: 250 SSLHIEKENGISNDDWLSNPSFTSPIEH 277


>SB_14029| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 249

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -1

Query: 309 HLPMVLDYLFDETFFPKFVSALLAREPRTFNLSDTTAGVI 190
           H  +  DY F ET+ P+ +   L       N+SDT+ GV+
Sbjct: 165 HDQLYPDYAFAETWMPESIVNGLRALGHKVNVSDTSHGVV 204


>SB_14817| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 594

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 27  NSLKKHRRRRKDPVAAKPRRRSGPK 101
           N   KH  ++K PV   P+R  GPK
Sbjct: 304 NDKHKHNSKQKTPVVYFPKRPYGPK 328


>SB_5008| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 406

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = -2

Query: 92  TSSSWLCRHRI--LPSSSVFFEAVWXEAFASF 3
           + SSW C+H+I  L S SVF   +     A F
Sbjct: 275 SQSSWYCKHQIDMLTSGSVFLSDIMYNEHAVF 306


>SB_51905| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 928

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -2

Query: 125 CSTCHELFLWTTSSSWLCRHRILPSSSVFFEAVWXE-AFAS 6
           C  C E F++TTS   L RH+++ S +  F+    E AF S
Sbjct: 846 CDICKENFMYTTS---LARHKLIHSGAKPFKCDTCEKAFRS 883


>SB_33294| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 983

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +1

Query: 7   DAKASXQTASKNTEEEGRIRWRQSQEEEVVQRKSS*QVEQ 126
           +   S Q A+ N ++EG    +Q QE + +QR+   Q +Q
Sbjct: 778 NTSTSQQWANNNWQQEGIQTQQQQQERQQLQRRQLLQQQQ 817


>SB_6561| Best HMM Match : HEAT (HMM E-Value=0.028)
          Length = 1444

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -1

Query: 345 DWIIALGRTRVDHLPMVLDYLFDETFFPKFVSALLAR 235
           DW+ ALG+     LP+  +   D+ F  K +  +L +
Sbjct: 471 DWVCALGKELSHQLPLYAELPNDKNFLFKCIGIVLRK 507


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,968,760
Number of Sequences: 59808
Number of extensions: 245470
Number of successful extensions: 785
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 594991920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)