Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0818
(369 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g34555.1 68417.m04910 40S ribosomal protein S25, putative 68 2e-12
At4g39200.1 68417.m05550 40S ribosomal protein S25 (RPS25E) ribo... 67 4e-12
At2g16360.1 68415.m01872 40S ribosomal protein S25 (RPS25A) 67 4e-12
At2g21580.1 68415.m02567 40S ribosomal protein S25 (RPS25B) 66 5e-12
At1g14500.1 68414.m01719 ankyrin repeat family protein contains ... 29 1.3
At5g64950.1 68418.m08170 mitochondrial transcription termination... 27 2.9
At5g42390.1 68418.m05161 metalloendopeptidase identical to chlor... 27 2.9
At2g17250.1 68415.m01992 expressed protein weak similarity to Ri... 27 2.9
At5g67560.1 68418.m08519 ADP-ribosylation factor, putative ident... 27 3.9
At5g37680.1 68418.m04538 ADP-ribosylation factor, putative ADP-r... 27 5.2
At2g23170.1 68415.m02768 auxin-responsive GH3 family protein sim... 27 5.2
At1g24706.1 68414.m03104 expressed protein 27 5.2
At1g48180.1 68414.m05378 expressed protein ; expression supporte... 26 6.8
At5g38830.1 68418.m04697 tRNA synthetase class I (C) family prot... 26 9.0
At5g27640.1 68418.m03311 eukaryotic translation initiation facto... 26 9.0
At4g36670.1 68417.m05203 mannitol transporter, putative similar ... 26 9.0
At4g13590.1 68417.m02116 expressed protein contains Pfam profile... 26 9.0
At2g02810.1 68415.m00226 UDP-galactose/UDP-glucose transporter c... 26 9.0
>At4g34555.1 68417.m04910 40S ribosomal protein S25, putative
Length = 108
Score = 68.1 bits (159), Expect = 2e-12
Identities = 29/51 (56%), Positives = 41/51 (80%)
Frame = +2
Query: 119 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALTNLGKK 271
+NN VLFD+ TY+KL E P++KLITP+++S+RL++ GSLARRA+ L K
Sbjct: 37 VNNMVLFDQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRELMAK 87
Score = 32.7 bits (71), Expect = 0.078
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +1
Query: 244 KSTHELREKGLIKQVVQHHGQVIYTRATKG 333
++ EL KG I+ V H Q IYTRAT G
Sbjct: 79 RAIRELMAKGTIRMVSAHSSQQIYTRATHG 108
>At4g39200.1 68417.m05550 40S ribosomal protein S25 (RPS25E)
ribosomal protein S25, Lycopersicon esculentum,
PIR2:S40089
Length = 108
Score = 66.9 bits (156), Expect = 4e-12
Identities = 28/51 (54%), Positives = 41/51 (80%)
Frame = +2
Query: 119 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALTNLGKK 271
+NN VLFD+ TY+KL E P++KLITP+++S+R+++ GSLARRA+ L K
Sbjct: 37 VNNMVLFDQATYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAK 87
Score = 32.3 bits (70), Expect = 0.10
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +1
Query: 244 KSTHELREKGLIKQVVQHHGQVIYTRAT 327
++ EL KG+I+ V H Q IYTRAT
Sbjct: 79 RAIRELMAKGVIRMVAAHSSQQIYTRAT 106
>At2g16360.1 68415.m01872 40S ribosomal protein S25 (RPS25A)
Length = 125
Score = 66.9 bits (156), Expect = 4e-12
Identities = 27/48 (56%), Positives = 41/48 (85%)
Frame = +2
Query: 119 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALTNL 262
+NN VLFD+ TY+KL E P++KLITP+++S+RL++ GSLAR+A+ +L
Sbjct: 53 VNNMVLFDQATYDKLMSEAPKFKLITPSILSDRLRINGSLARKAIRDL 100
>At2g21580.1 68415.m02567 40S ribosomal protein S25 (RPS25B)
Length = 108
Score = 66.5 bits (155), Expect = 5e-12
Identities = 28/51 (54%), Positives = 41/51 (80%)
Frame = +2
Query: 119 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALTNLGKK 271
+NN VLFD+ TY+KL E P++KLITP+++S+R+++ GSLARRA+ L K
Sbjct: 37 VNNMVLFDQGTYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAK 87
Score = 32.7 bits (71), Expect = 0.078
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = +1
Query: 244 KSTHELREKGLIKQVVQHHGQVIYTRAT 327
++ EL KGLI+ V H Q IYTRAT
Sbjct: 79 RAIRELMAKGLIRMVSAHSSQQIYTRAT 106
>At1g14500.1 68414.m01719 ankyrin repeat family protein contains
Pfam domain, PF00023: Ankyrin repeat
Length = 436
Score = 28.7 bits (61), Expect = 1.3
Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = -1
Query: 183 YCGTSLYSFSYVGLSN--NTWLFNLSRTFPLDHFFFLALPPPDPSFFFC 43
+C LY+F + + + TW F + + + + +A+ P+P F C
Sbjct: 342 FCCALLYTFCLLPIGSLFTTWFFWIGASLGVSYALAMAIISPNPLLFLC 390
>At5g64950.1 68418.m08170 mitochondrial transcription termination
factor-related / mTERF-related contains Pfam profile
PF02536: mTERF
Length = 391
Score = 27.5 bits (58), Expect = 2.9
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = -1
Query: 354 SLCDWIIALGRTRVDHLPMVLDYLFDETFFPKFVSALLAREPRTFNLSD 208
S C W++ + LP + YL +++LL R+PR FNLS+
Sbjct: 166 SRCGWLLLSRDPNLFLLPNI-SYLETCGIVGSQLASLLRRQPRIFNLSE 213
>At5g42390.1 68418.m05161 metalloendopeptidase identical to
chloroplast processing enzyme metalloendopeptidase
[Arabidopsis thaliana] gi|2827039|gb|AAC39482
Length = 1265
Score = 27.5 bits (58), Expect = 2.9
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -1
Query: 312 DHLPMVLDYLFDETFFPKFVSALLAREPR 226
D P VLD L + F PKF+S+ + +E R
Sbjct: 288 DLFPSVLDALNEIAFHPKFLSSRVEKERR 316
>At2g17250.1 68415.m01992 expressed protein weak similarity to
Ribosome biogenesis protein MAK21 (Swiss-Prot:Q12176)
[Saccharomyces cerevisiae]
Length = 577
Score = 27.5 bits (58), Expect = 2.9
Identities = 11/36 (30%), Positives = 24/36 (66%)
Frame = +2
Query: 122 NNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVR 229
+++ + +KPT +K E L++PA +S+R+K++
Sbjct: 245 SDESISEKPTDKKKKTEKGDSTLLSPATISKRMKLK 280
>At5g67560.1 68418.m08519 ADP-ribosylation factor, putative
identical to GP:15450888 ADP-ribosylation factor-like
protein {Arabidopsis thaliana]
Length = 184
Score = 27.1 bits (57), Expect = 3.9
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -3
Query: 181 LWDFLVQFLICGFIKQHLVVQLVTNFSFGPLLLLGFAATG 62
LWD L+ +L F KQ + + L+ + G L+ ATG
Sbjct: 3 LWDALLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATG 42
>At5g37680.1 68418.m04538 ADP-ribosylation factor, putative
ADP-ribosylation factor, Leishmania major, EMBL:LMFP1421
and ADP-ribosylation factor-like protein 1 (ARL1)
(SP:P40616) Homo sapiens; contains PF00025:
ADP-ribosylation factor family
Length = 184
Score = 26.6 bits (56), Expect = 5.2
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -3
Query: 181 LWDFLVQFLICGFIKQHLVVQLVTNFSFGPLLLLGFAATG 62
LWD L+ +L F KQ + + LV + G L+ ATG
Sbjct: 3 LWDSLLNWLRSLFFKQEMELSLVGLQNAGKTSLVNAIATG 42
>At2g23170.1 68415.m02768 auxin-responsive GH3 family protein
similar to auxin-responsive GH3 product [Glycine max]
GI:18591; contains Pfam profile PF03321: GH3
auxin-responsive promoter
Length = 595
Score = 26.6 bits (56), Expect = 5.2
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 157 LICGFIKQHLVVQLVTNFSFGPLLLLGFAAT 65
++CG + +H V++L F+ G L +GF T
Sbjct: 213 MLCGLLMRHEVLRLGAVFASGLLRAIGFLQT 243
>At1g24706.1 68414.m03104 expressed protein
Length = 1781
Score = 26.6 bits (56), Expect = 5.2
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -1
Query: 120 NLSRTFPLDHFFFLALPPPDP 58
+L ++ P DHF LPPP P
Sbjct: 1562 SLEKSHPDDHFHSQGLPPPPP 1582
>At1g48180.1 68414.m05378 expressed protein ; expression supported
by MPSS
Length = 239
Score = 26.2 bits (55), Expect = 6.8
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 216 LSDTTAGVISLYCGTSLYSFSYVGL 142
L + + +YCGTS SYVGL
Sbjct: 149 LQQDASAITGIYCGTSGEPASYVGL 173
>At5g38830.1 68418.m04697 tRNA synthetase class I (C) family protein
similar to SP|Q06752 Cysteinyl-tRNA synthetase (EC
6.1.1.16) (Cysteine--tRNA ligase) (CysRS) {Bacillus
subtilis}; contains Pfam profile PF01406: tRNA
synthetases class I (C)
Length = 511
Score = 25.8 bits (54), Expect = 9.0
Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Frame = -1
Query: 204 TAGVISLY-CGTSLYSFSYVG 145
T G I LY CG + Y FS++G
Sbjct: 25 TPGKIGLYVCGITAYDFSHIG 45
>At5g27640.1 68418.m03311 eukaryotic translation initiation factor 3
subunit 9 / eIF-3 eta / eIF3b (TIF3B1) nearly identical
to SP|Q9C5Z1 Eukaryotic translation initiation factor 3
subunit 9 (eIF-3 eta) (eIF3 p110) (eIF3b) {Arabidopsis
thaliana}
Length = 712
Score = 25.8 bits (54), Expect = 9.0
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = -1
Query: 183 YCGTSLYSFSYVGLSNNTWLFNLSRTFPL--DHFFFLALPPPDPSF 52
Y T++ S + W FN + + DHFF LA P PSF
Sbjct: 566 YVATAVTSVHEMENGFTIWSFNGIMLYRILKDHFFQLAWRPRPPSF 611
>At4g36670.1 68417.m05203 mannitol transporter, putative similar to
mannitol transporter [Apium graveolens var. dulce]
GI:12004316; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 493
Score = 25.8 bits (54), Expect = 9.0
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -1
Query: 195 VISLYCGTSLYSFSYVGLSNNTWLFNLSRTFPL 97
V+S+ S +F +GL TW+++ S FPL
Sbjct: 377 VLSIVAAYSFVAFFSIGLGPITWVYS-SEVFPL 408
>At4g13590.1 68417.m02116 expressed protein contains Pfam profile
PF01169: Uncharacterized protein family UPF0016
Length = 359
Score = 25.8 bits (54), Expect = 9.0
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 4 KDAKASXQTASKNTEEEGRIRWRQSQEEEVVQRKSS*QVEQP 129
KDA +KN EE G S+ EE+V+ K+S ++ P
Sbjct: 231 KDAWDLPPVEAKNGEETGIELGEYSEAEELVKEKASKKLTNP 272
>At2g02810.1 68415.m00226 UDP-galactose/UDP-glucose transporter
contains transmembrane domains; identical to
UDP-galactose/UDP-glucose transporter (GI:22651763)
[Arabidopsis thaliana] similar to UGTrel1 (GI:1669564)
[Rattus rattus]; identical to cDNA
UDP-galactose/UDP-glucose transporter GI:22651762
Length = 332
Score = 25.8 bits (54), Expect = 9.0
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -3
Query: 178 WDFLVQFLICGFIKQHLVVQLVTNF 104
WD L ++ ICG + Q+ + ++NF
Sbjct: 245 WDIL-KYCICGAVGQNFIFMTISNF 268
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,294,087
Number of Sequences: 28952
Number of extensions: 166843
Number of successful extensions: 575
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 487896136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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