Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0817
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    26   4.5  
SPBP8B7.08c |||leucine carboxyl methyltransferase |Schizosacchar...    26   4.5  
SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch...    26   6.0  
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe...    25   7.9  
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy...    25   7.9  
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    25   7.9  

>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = -2

Query: 697 RSVLFVPQTNVLH--FLKWLSQRLPIVV*RVLALPLVWPPSDVSLTPSGIAKLCDGCRCT 524
           RS L  P  N +   F  ++   LP+ V +V +  + + P+D +LTP  I  + +    T
Sbjct: 468 RSTLVCPVCNTVSITFDPFMDLTLPLPVKQVWSHTVTFIPADTNLTPLAIEVVLESKAAT 527

Query: 523 V 521
           +
Sbjct: 528 I 528


>SPBP8B7.08c |||leucine carboxyl methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 310

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 281 FVVPAKNPHAPPPVSVKTTGPVWDIGQVLK 370
           F  P++N H PP ++  T    W I  +L+
Sbjct: 30  FFSPSRNSHKPPIINRGTYVRTWSIDHILQ 59


>SPAC2G11.03c |vps45||vacuolar sorting protein Vps
           45|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 558

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 350 DIGQVLKAARLLCKPPQQVDFEDEQEMRF 436
           ++G+V ++  L+C  PQ  DF D Q + F
Sbjct: 349 EVGEVEQS--LVCNEPQSTDFNDIQRLLF 375


>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 727

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 287 VPAKNPHAPPPVSVKTTGPVWD 352
           +P  +P  P  +  +T GP+WD
Sbjct: 671 IPRAHPQLPKNLLSQTAGPLWD 692


>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
 Frame = -2

Query: 382 KTSRF*DLSDVPNWAGSFNGNRWWCM-RILRRHHEAPRCPLLRCSSTGFCCCSESSLVKE 206
           KT R  DL+ +    G+   N    + + + R H  P    +R  +T F C S      E
Sbjct: 165 KTLRMIDLTGIQVCVGNMVPNEMEALQKCIERIHARPIQTSVRIDTTHFICSSTGGPEYE 224

Query: 205 VKAVLSSRIIGLMLLI 158
                +  I+GL  L+
Sbjct: 225 KAKAANIPILGLDYLL 240


>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +3

Query: 411 SRTNKKCVSFILLFMTFSDINVSWT--RPWTIL 503
           S      +SFI+LFMT+  + + W   R W+++
Sbjct: 373 SAVESAMISFIVLFMTWLKLLIPWRLFRLWSLI 405


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,970,656
Number of Sequences: 5004
Number of extensions: 62637
Number of successful extensions: 181
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)