Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0817
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57322| Best HMM Match : DNA_pol_A (HMM E-Value=1.7e-07)             30   1.6  
SB_58104| Best HMM Match : TPR_1 (HMM E-Value=0)                       30   2.1  
SB_12028| Best HMM Match : DAG1 (HMM E-Value=0.22)                     28   8.4  
SB_3540| Best HMM Match : RF-1 (HMM E-Value=2.1)                       28   8.4  
SB_52816| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)               28   8.4  

>SB_57322| Best HMM Match : DNA_pol_A (HMM E-Value=1.7e-07)
          Length = 246

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/26 (57%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = +2

Query: 392 PPQQVDFED-EQEMRFVYSVIYDVFR 466
           PP +VDF++ E+  R VYSVIY V R
Sbjct: 5   PPVKVDFKERERTKRIVYSVIYGVGR 30


>SB_58104| Best HMM Match : TPR_1 (HMM E-Value=0)
          Length = 398

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +2

Query: 593 DQGQSKNALHNYWKALGQPFKEMENVCLGNKE 688
           D G + N LHNY KAL   +K+  N C+  +E
Sbjct: 77  DMGSTYNKLHNYNKALDY-YKQSLNACMKTEE 107


>SB_12028| Best HMM Match : DAG1 (HMM E-Value=0.22)
          Length = 1249

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = -2

Query: 583 SDVSLTPSGIAKLCDGCRCTVGSQPELNIVHGLVQDTFISENVINNRI 440
           +D S+TP+ + K+      TV   P+L +V+ + + T  S  V N ++
Sbjct: 806 TDSSITPTTVTKVIPTSTATVVIPPDLVVVNDIGRVTVTSGKVFNYQV 853


>SB_3540| Best HMM Match : RF-1 (HMM E-Value=2.1)
          Length = 395

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
 Frame = +3

Query: 15  LYVSKENQKNRFKIFSNYMKK*INKNTRFIKL--FLLSVRMHRSHASKNQINNMR 173
           L + ++N + +F +F NY  + + ++  FIK   ++L  R+ R +  KN + + R
Sbjct: 257 LKLKEQNARLQFVLFGNYRSRVVQEDVLFIKADNYILR-RLVRKNIVKNYVKSSR 310


>SB_52816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1622

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 18/66 (27%), Positives = 29/66 (43%)
 Frame = +2

Query: 344 VWDIGQVLKAARLLCKPPQQVDFEDEQEMRFVYSVIYDVFRYKCVLDQAMDDIEFWLTTH 523
           +W I    K +  +      +  E     R +Y VI  +F   C +   +  I FW+ +H
Sbjct: 759 LWKIQTFTKISHYVTGSFSGIVAEFTMTRRALYYVI-QIF-LPCAMIVFLSWISFWIDSH 816

Query: 524 STPATV 541
           STPA +
Sbjct: 817 STPARI 822


>SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1913

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 410 FEDEQEMRFVYSVIYDVFRYKCVLDQAMDDIEFW 511
           F+D+ E R  YS+ +   RY+ VL+  + D  F+
Sbjct: 109 FDDDLERRRAYSMAFGAKRYELVLEDVLLDSYFF 142


>SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)
          Length = 1079

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 19/84 (22%), Positives = 40/84 (47%)
 Frame = +3

Query: 24  SKENQKNRFKIFSNYMKK*INKNTRFIKLFLLSVRMHRSHASKNQINNMRPMILEDRTAF 203
           SK+N+ +R +  ++  +K  +K     K+F +  +  + + + N    +  M + ++   
Sbjct: 767 SKKNKNHRRRHSAHEHRKDNDKE----KIFEMDAKKEQENGNTNDEEELEDMSMAEKPGS 822

Query: 204 TSLTNDDSEQQQKPVEEHRRSGHR 275
            S    D+E  + P + HRR  HR
Sbjct: 823 QS----DNELNRPPQDRHRRHHHR 842


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,556,269
Number of Sequences: 59808
Number of extensions: 491899
Number of successful extensions: 1371
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1371
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)