Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0817
         (698 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g27850.1 68417.m03999 proline-rich family protein contains pr...    29   2.2  
At5g37950.1 68418.m04571 hypothetical protein                          29   3.9  
At4g18750.1 68417.m02771 pentatricopeptide (PPR) repeat-containi...    28   5.2  
At2g30910.2 68415.m03768 transducin family protein / WD-40 repea...    28   6.8  
At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP1...    28   6.8  
At3g10010.1 68416.m01201 HhH-GPD base excision DNA repair family...    27   9.0  
At1g11870.2 68414.m01369 seryl-tRNA synthetase, putative / serin...    27   9.0  
At1g11870.1 68414.m01368 seryl-tRNA synthetase, putative / serin...    27   9.0  
At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical...    27   9.0  

>At4g27850.1 68417.m03999 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 577

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = -2

Query: 313 WCMRILRRHHEAPRCPLLRCSSTGFCCCSESSLVKEVKAVLSSRIIGLML 164
           +C+R   R H  PRC +LRC    F   ++    K    + +S +  + L
Sbjct: 472 YCVRRSYRVHHKPRCRILRCRFRSFNSITDKGHYKAAVVLAASLVCVISL 521


>At5g37950.1 68418.m04571 hypothetical protein
          Length = 351

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = +2

Query: 302 PHAPPPVSVKTTGPVWDIGQVLKAARLLCKPPQQVDFEDEQEMRFVYSVIYDVFRY 469
           P + P   +KT GP+W I ++ K   +  K         +QE   +  VIYD F Y
Sbjct: 40  PESLPASDLKTLGPIWFIIKLNKECEISFKKCLGQFLLQQQEE--IACVIYDEFMY 93


>At4g18750.1 68417.m02771 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 871

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +3

Query: 381 FSASHHSKSISRTNKKCVSFILLFMTFSDINVSWTRPWTILSSG 512
           FS  H + S+     KC + +L  M F DI       WT++ +G
Sbjct: 531 FSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAG 574


>At2g30910.2 68415.m03768 transducin family protein / WD-40 repeat
           family protein contains 6 WD-40 repeats (PF00400) (1
           weak); similar to ARP2/3 complex 41 kDa subunit
           (P41-ARC) (Actin-related protein 2/3 complex subunit 1B)
           (SP:O88656) [Rattus norvegicus]
          Length = 378

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 8/63 (12%)
 Frame = -2

Query: 322 NRWWCMRILRRHHEA--------PRCPLLRCSSTGFCCCSESSLVKEVKAVLSSRIIGLM 167
           N WW  +++R+ HE+        P   LL  +ST   C   S+ +K V    +  + G  
Sbjct: 132 NNWWVSKLIRKRHESSVTSVAWHPNNVLLATTSTDGKCRVFSTFIKGVDTKYAHYLNGAF 191

Query: 166 LLI 158
            L+
Sbjct: 192 FLL 194


>At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP19)
           non-consensus splice site at the intron:exon boundary
           (AT:exon)
          Length = 247

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +2

Query: 272 PWSFVVPAKNPHAPPPVSVKTTGPVWDIGQVLKAARLLCKPPQ 400
           P S   P  +P  PPP    T+ P   +  V+  A    +PPQ
Sbjct: 60  PVSAAQPPASPVTPPPAVTPTSPPAPKVAPVISPATPPPQPPQ 102


>At3g10010.1 68416.m01201 HhH-GPD base excision DNA repair family
           protein similar to DEMETER protein [Arabidopsis
           thaliana] GI:21743571; contains Pfam profile PF00730:
           HhH-GPD superfamily base excision DNA repair protein
          Length = 1309

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 520 GSQPELNIVHGLVQDTFISENVINN 446
           G QPE  ++HGL Q+  I  N+ +N
Sbjct: 16  GRQPETEVLHGLPQEQSIFNNMQHN 40


>At1g11870.2 68414.m01369 seryl-tRNA synthetase, putative /
           serine--tRNA ligase, putative similar to PIR|T03949
           serine--tRNA ligase (EC 6.1.1.11) serS {Zea mays};
           contains Pfam profiles PF00587: tRNA synthetase class II
           core domain (G, H, P, S and T), PF02403: Seryl-tRNA
           synthetase N-terminal domain
          Length = 514

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = +1

Query: 259 GGVGTVELRGACEESSCTTTGFR*NYRPSLGHRTGLKSGSSSLQAT 396
           G  G +     C +      G R  YRPS   +TG K G ++L AT
Sbjct: 419 GRFGEISSASNCTDYQSRRLGIR--YRPSEPPQTGPKKGKANLPAT 462


>At1g11870.1 68414.m01368 seryl-tRNA synthetase, putative /
           serine--tRNA ligase, putative similar to PIR|T03949
           serine--tRNA ligase (EC 6.1.1.11) serS {Zea mays};
           contains Pfam profiles PF00587: tRNA synthetase class II
           core domain (G, H, P, S and T), PF02403: Seryl-tRNA
           synthetase N-terminal domain
          Length = 512

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = +1

Query: 259 GGVGTVELRGACEESSCTTTGFR*NYRPSLGHRTGLKSGSSSLQAT 396
           G  G +     C +      G R  YRPS   +TG K G ++L AT
Sbjct: 417 GRFGEISSASNCTDYQSRRLGIR--YRPSEPPQTGPKKGKANLPAT 460


>At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical to
           DNA Helicase [Arabidopsis thaliana] GI:11121449
          Length = 1188

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/48 (25%), Positives = 23/48 (47%)
 Frame = -2

Query: 310 CMRILRRHHEAPRCPLLRCSSTGFCCCSESSLVKEVKAVLSSRIIGLM 167
           C R L+  H   +     C  T   CCS  SL+ +   +++ +++ L+
Sbjct: 833 CRRFLQLVHLGEKFDSTNCKKTCDNCCSSQSLIDKDVTLITRQLVELV 880


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,738,675
Number of Sequences: 28952
Number of extensions: 343041
Number of successful extensions: 1025
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1025
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)