Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0815
         (627 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr...    64   2e-11
SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|...    64   2e-11
SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pomb...    64   2e-11
SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr 2|||...    49   5e-07
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   6.8  
SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual        25   6.8  
SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr 2|...    25   9.0  

>SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 136

 Score = 63.7 bits (148), Expect = 2e-11
 Identities = 30/35 (85%), Positives = 32/35 (91%)
 Frame = -2

Query: 611 FQTDWRFQSAAIGALQEASEAYLVGLFEDTNLCAI 507
           F+TD RFQS+AIGALQEA EAYLV LFEDTNLCAI
Sbjct: 79  FKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAI 113



 Score = 44.0 bits (99), Expect = 2e-05
 Identities = 19/27 (70%), Positives = 22/27 (81%)
 Frame = -1

Query: 519 LVCYHAKRVTIMPKDIQLARRIRGERA 439
           L   H KRVTI PKD+QLARR+RGER+
Sbjct: 110 LCAIHGKRVTIQPKDMQLARRLRGERS 136


>SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 136

 Score = 63.7 bits (148), Expect = 2e-11
 Identities = 30/35 (85%), Positives = 32/35 (91%)
 Frame = -2

Query: 611 FQTDWRFQSAAIGALQEASEAYLVGLFEDTNLCAI 507
           F+TD RFQS+AIGALQEA EAYLV LFEDTNLCAI
Sbjct: 79  FKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAI 113



 Score = 44.0 bits (99), Expect = 2e-05
 Identities = 19/27 (70%), Positives = 22/27 (81%)
 Frame = -1

Query: 519 LVCYHAKRVTIMPKDIQLARRIRGERA 439
           L   H KRVTI PKD+QLARR+RGER+
Sbjct: 110 LCAIHGKRVTIQPKDMQLARRLRGERS 136


>SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 136

 Score = 63.7 bits (148), Expect = 2e-11
 Identities = 30/35 (85%), Positives = 32/35 (91%)
 Frame = -2

Query: 611 FQTDWRFQSAAIGALQEASEAYLVGLFEDTNLCAI 507
           F+TD RFQS+AIGALQEA EAYLV LFEDTNLCAI
Sbjct: 79  FKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAI 113



 Score = 44.0 bits (99), Expect = 2e-05
 Identities = 19/27 (70%), Positives = 22/27 (81%)
 Frame = -1

Query: 519 LVCYHAKRVTIMPKDIQLARRIRGERA 439
           L   H KRVTI PKD+QLARR+RGER+
Sbjct: 110 LCAIHGKRVTIQPKDMQLARRLRGERS 136


>SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 120

 Score = 49.2 bits (112), Expect = 5e-07
 Identities = 25/39 (64%), Positives = 30/39 (76%), Gaps = 2/39 (5%)
 Frame = -2

Query: 617 SGFQTD--WRFQSAAIGALQEASEAYLVGLFEDTNLCAI 507
           + F TD   R+QS A+  LQEA+EA+LV LFEDTNLCAI
Sbjct: 61  ANFSTDVGLRWQSTALQCLQEAAEAFLVHLFEDTNLCAI 99



 Score = 39.5 bits (88), Expect = 4e-04
 Identities = 18/24 (75%), Positives = 20/24 (83%)
 Frame = -1

Query: 519 LVCYHAKRVTIMPKDIQLARRIRG 448
           L   HAKRVTIM +D+QLARRIRG
Sbjct: 96  LCAIHAKRVTIMQRDMQLARRIRG 119


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 430 TNLSTFTTDSSSKLNILRHDGHTFGVIAHKLVSSNK 537
           T+ ST T+ SSS         H+  + +HK  SS+K
Sbjct: 378 TSSSTLTSSSSSSSRPASSSSHSSSLSSHKSSSSSK 413


>SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 539 QRDKPRLPPGELRWRQTGNANQFEILSV 622
           Q   PR+PP   R +  GN+NQ  + +V
Sbjct: 38  QYQPPRMPPPSTRPQTDGNSNQIPMENV 65


>SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 342

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = -1

Query: 576 RSSPGGKRGLSRWLVRRHQLVCYHAKRVTIMPKDIQLARRIRG 448
           +S P G +  S+W++ + QLV +    +  +P D +  +R +G
Sbjct: 6   KSVPPGSQNTSQWIISKDQLV-FTPSALDGIPLDQEEIQRSKG 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,360,359
Number of Sequences: 5004
Number of extensions: 43363
Number of successful extensions: 106
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)