Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0815
(627 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g65360.1 68418.m08221 histone H3 identical to histone H3 from... 64 5e-11
At5g65350.1 68418.m08220 histone H3 nearly identical to histone ... 64 5e-11
At5g10400.1 68418.m01206 histone H3 identical to several histone... 64 5e-11
At5g10390.1 68418.m01205 histone H3 identical to histone H3 from... 64 5e-11
At3g27360.1 68416.m03421 histone H3 identical to histone H3 from... 64 5e-11
At1g09200.1 68414.m01027 histone H3 identical to histone H3 from... 64 5e-11
At5g10980.1 68418.m01277 histone H3 identical to HISTONE H3.2, M... 62 4e-10
At4g40040.1 68417.m05668 histone H3.2 identical to Histone H3.2,... 62 4e-10
At4g40030.1 68417.m05667 histone H3.2 identical to Histone H3.2,... 62 4e-10
At1g13370.1 68414.m01554 histone H3, putative strong similarity ... 62 4e-10
At1g75600.1 68414.m08784 histone H3.2, putative strong similarit... 60 9e-10
At1g19890.1 68414.m02494 histone H3, putative similar to histone... 60 2e-09
At5g12910.1 68418.m01481 histone H3, putative similar to histone... 54 6e-08
At1g01370.1 68414.m00052 centromeric histone H3 HTR12 (HTR12) si... 41 8e-04
At3g14370.1 68416.m01818 protein kinase family protein contains ... 29 2.5
At4g31160.1 68417.m04423 transducin family protein / WD-40 repea... 27 7.7
>At5g65360.1 68418.m08221 histone H3 identical to histone H3 from
Zea mays SP|P05203, Medicago sativa GI:166384,
Encephalartos altensteinii SP|P08903, Pisum sativum
SP|P02300; contains Pfam profile PF00125 Core histone
H2A/H2B/H3/H4
Length = 136
Score = 64.5 bits (150), Expect = 5e-11
Identities = 29/35 (82%), Positives = 33/35 (94%)
Frame = -2
Query: 611 FQTDWRFQSAAIGALQEASEAYLVGLFEDTNLCAI 507
F+TD RFQS+A+ ALQEA+EAYLVGLFEDTNLCAI
Sbjct: 79 FKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAI 113
Score = 50.8 bits (116), Expect = 7e-07
Identities = 24/27 (88%), Positives = 24/27 (88%)
Frame = -1
Query: 519 LVCYHAKRVTIMPKDIQLARRIRGERA 439
L HAKRVTIMPKDIQLARRIRGERA
Sbjct: 110 LCAIHAKRVTIMPKDIQLARRIRGERA 136
>At5g65350.1 68418.m08220 histone H3 nearly identical to histone H3
from Zea mays SP|P05203, Medicago sativa GI:166384,
Encephalartos altensteinii SP|P08903, Pisum sativum
SP|P02300; contains Pfam profile PF00125 Core histone
H2A/H2B/H3/H4
Length = 139
Score = 64.5 bits (150), Expect = 5e-11
Identities = 29/35 (82%), Positives = 33/35 (94%)
Frame = -2
Query: 611 FQTDWRFQSAAIGALQEASEAYLVGLFEDTNLCAI 507
F+TD RFQS+A+ ALQEA+EAYLVGLFEDTNLCAI
Sbjct: 79 FKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAI 113
Score = 49.2 bits (112), Expect = 2e-06
Identities = 23/27 (85%), Positives = 24/27 (88%)
Frame = -1
Query: 519 LVCYHAKRVTIMPKDIQLARRIRGERA 439
L HAKRVTIMPK+IQLARRIRGERA
Sbjct: 110 LCAIHAKRVTIMPKEIQLARRIRGERA 136
>At5g10400.1 68418.m01206 histone H3 identical to several histone H3
proteins, including Zea mays SP|P05203, Medicago sativa
GI:166384, Encephalartos altensteinii SP|P08903, Pisum
sativum SP|P02300; contains Pfam profile PF00125 Core
histone H2A/H2B/H3/H4
Length = 136
Score = 64.5 bits (150), Expect = 5e-11
Identities = 29/35 (82%), Positives = 33/35 (94%)
Frame = -2
Query: 611 FQTDWRFQSAAIGALQEASEAYLVGLFEDTNLCAI 507
F+TD RFQS+A+ ALQEA+EAYLVGLFEDTNLCAI
Sbjct: 79 FKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAI 113
Score = 50.8 bits (116), Expect = 7e-07
Identities = 24/27 (88%), Positives = 24/27 (88%)
Frame = -1
Query: 519 LVCYHAKRVTIMPKDIQLARRIRGERA 439
L HAKRVTIMPKDIQLARRIRGERA
Sbjct: 110 LCAIHAKRVTIMPKDIQLARRIRGERA 136
>At5g10390.1 68418.m01205 histone H3 identical to histone H3 from
Zea mays SP|P05203, Medicago sativa GI:166384,
Encephalartos altensteinii SP|P08903, Pisum sativum
SP|P02300; contains Pfam profile PF00125 Core histone
H2A/H2B/H3/H4
Length = 136
Score = 64.5 bits (150), Expect = 5e-11
Identities = 29/35 (82%), Positives = 33/35 (94%)
Frame = -2
Query: 611 FQTDWRFQSAAIGALQEASEAYLVGLFEDTNLCAI 507
F+TD RFQS+A+ ALQEA+EAYLVGLFEDTNLCAI
Sbjct: 79 FKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAI 113
Score = 50.8 bits (116), Expect = 7e-07
Identities = 24/27 (88%), Positives = 24/27 (88%)
Frame = -1
Query: 519 LVCYHAKRVTIMPKDIQLARRIRGERA 439
L HAKRVTIMPKDIQLARRIRGERA
Sbjct: 110 LCAIHAKRVTIMPKDIQLARRIRGERA 136
>At3g27360.1 68416.m03421 histone H3 identical to histone H3 from
Zea mays SP|P05203, Medicago sativa GI:166384,
Encephalartos altensteinii SP|P08903, Pisum sativum
SP|P02300; contains Pfam profile PF00125 Core histone
H2A/H2B/H3/H4
Length = 136
Score = 64.5 bits (150), Expect = 5e-11
Identities = 29/35 (82%), Positives = 33/35 (94%)
Frame = -2
Query: 611 FQTDWRFQSAAIGALQEASEAYLVGLFEDTNLCAI 507
F+TD RFQS+A+ ALQEA+EAYLVGLFEDTNLCAI
Sbjct: 79 FKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAI 113
Score = 50.8 bits (116), Expect = 7e-07
Identities = 24/27 (88%), Positives = 24/27 (88%)
Frame = -1
Query: 519 LVCYHAKRVTIMPKDIQLARRIRGERA 439
L HAKRVTIMPKDIQLARRIRGERA
Sbjct: 110 LCAIHAKRVTIMPKDIQLARRIRGERA 136
>At1g09200.1 68414.m01027 histone H3 identical to histone H3 from
Zea mays SP|P05203, Medicago sativa GI:166384,
Encephalartos altensteinii SP|P08903, Pisum sativum
SP|P02300; contains Pfam profile PF00125 Core histone
H2A/H2B/H3/H4
Length = 136
Score = 64.5 bits (150), Expect = 5e-11
Identities = 29/35 (82%), Positives = 33/35 (94%)
Frame = -2
Query: 611 FQTDWRFQSAAIGALQEASEAYLVGLFEDTNLCAI 507
F+TD RFQS+A+ ALQEA+EAYLVGLFEDTNLCAI
Sbjct: 79 FKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAI 113
Score = 50.8 bits (116), Expect = 7e-07
Identities = 24/27 (88%), Positives = 24/27 (88%)
Frame = -1
Query: 519 LVCYHAKRVTIMPKDIQLARRIRGERA 439
L HAKRVTIMPKDIQLARRIRGERA
Sbjct: 110 LCAIHAKRVTIMPKDIQLARRIRGERA 136
>At5g10980.1 68418.m01277 histone H3 identical to HISTONE H3.2,
MINOR, Medicago sativa, SWISSPROT:P11105, histone H3
variant H3.3 Lycopersicon esculentum GI:1435157;
contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
Length = 136
Score = 61.7 bits (143), Expect = 4e-10
Identities = 29/35 (82%), Positives = 32/35 (91%)
Frame = -2
Query: 611 FQTDWRFQSAAIGALQEASEAYLVGLFEDTNLCAI 507
F+TD RFQS A+ ALQEA+EAYLVGLFEDTNLCAI
Sbjct: 79 FKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAI 113
Score = 50.8 bits (116), Expect = 7e-07
Identities = 24/27 (88%), Positives = 24/27 (88%)
Frame = -1
Query: 519 LVCYHAKRVTIMPKDIQLARRIRGERA 439
L HAKRVTIMPKDIQLARRIRGERA
Sbjct: 110 LCAIHAKRVTIMPKDIQLARRIRGERA 136
>At4g40040.1 68417.m05668 histone H3.2 identical to Histone H3.2,
minor Lolium temulentum SP|P11105, nearly identical to
histone H3.2 Mus pahari GI:515005; contains Pfam profile
PF00125 Core histone H2A/H2B/H3/H4
Length = 136
Score = 61.7 bits (143), Expect = 4e-10
Identities = 29/35 (82%), Positives = 32/35 (91%)
Frame = -2
Query: 611 FQTDWRFQSAAIGALQEASEAYLVGLFEDTNLCAI 507
F+TD RFQS A+ ALQEA+EAYLVGLFEDTNLCAI
Sbjct: 79 FKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAI 113
Score = 50.8 bits (116), Expect = 7e-07
Identities = 24/27 (88%), Positives = 24/27 (88%)
Frame = -1
Query: 519 LVCYHAKRVTIMPKDIQLARRIRGERA 439
L HAKRVTIMPKDIQLARRIRGERA
Sbjct: 110 LCAIHAKRVTIMPKDIQLARRIRGERA 136
>At4g40030.1 68417.m05667 histone H3.2 identical to Histone H3.2,
minor Lolium temulentum SP|P11105, nearly identical to
histone H3.2 Mus pahari GI:515005; contains Pfam profile
PF00125 Core histone H2A/H2B/H3/H4
Length = 136
Score = 61.7 bits (143), Expect = 4e-10
Identities = 29/35 (82%), Positives = 32/35 (91%)
Frame = -2
Query: 611 FQTDWRFQSAAIGALQEASEAYLVGLFEDTNLCAI 507
F+TD RFQS A+ ALQEA+EAYLVGLFEDTNLCAI
Sbjct: 79 FKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAI 113
Score = 50.8 bits (116), Expect = 7e-07
Identities = 24/27 (88%), Positives = 24/27 (88%)
Frame = -1
Query: 519 LVCYHAKRVTIMPKDIQLARRIRGERA 439
L HAKRVTIMPKDIQLARRIRGERA
Sbjct: 110 LCAIHAKRVTIMPKDIQLARRIRGERA 136
>At1g13370.1 68414.m01554 histone H3, putative strong similarity to
Histone H3.2, minor Medicago sativa SP|P11105, histone
H3 Rubus idaeus GI:10732809; contains Pfam profile
PF00125 Core histone H2A/H2B/H3/H4
Length = 136
Score = 61.7 bits (143), Expect = 4e-10
Identities = 29/35 (82%), Positives = 32/35 (91%)
Frame = -2
Query: 611 FQTDWRFQSAAIGALQEASEAYLVGLFEDTNLCAI 507
F+TD RFQS A+ ALQEA+EAYLVGLFEDTNLCAI
Sbjct: 79 FKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAI 113
Score = 48.0 bits (109), Expect = 5e-06
Identities = 22/27 (81%), Positives = 23/27 (85%)
Frame = -1
Query: 519 LVCYHAKRVTIMPKDIQLARRIRGERA 439
L HAKRVTIMPKD+QLARRIR ERA
Sbjct: 110 LCAIHAKRVTIMPKDVQLARRIRAERA 136
>At1g75600.1 68414.m08784 histone H3.2, putative strong similarity
to histone H3.2 SP|P11105 GI:417103 from Lolium
temulentum, histone H3.2 from Mus pahari GI:515005;
contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
Length = 136
Score = 60.5 bits (140), Expect = 9e-10
Identities = 28/35 (80%), Positives = 32/35 (91%)
Frame = -2
Query: 611 FQTDWRFQSAAIGALQEASEAYLVGLFEDTNLCAI 507
++TD RFQS A+ ALQEA+EAYLVGLFEDTNLCAI
Sbjct: 79 YKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAI 113
Score = 50.4 bits (115), Expect = 1e-06
Identities = 23/27 (85%), Positives = 24/27 (88%)
Frame = -1
Query: 519 LVCYHAKRVTIMPKDIQLARRIRGERA 439
L HAKRVTIMPKD+QLARRIRGERA
Sbjct: 110 LCAIHAKRVTIMPKDVQLARRIRGERA 136
>At1g19890.1 68414.m02494 histone H3, putative similar to histone H3
from Chlamydomonas reinhardtii GI:571470, Volvox carteri
SP|P08437, histone H3.2 minor from Lolium temulentum
SP|P11105; contains Pfam profile PF00125 Core histone
H2A/H2B/H3/H4
Length = 137
Score = 59.7 bits (138), Expect = 2e-09
Identities = 28/35 (80%), Positives = 31/35 (88%)
Frame = -2
Query: 611 FQTDWRFQSAAIGALQEASEAYLVGLFEDTNLCAI 507
F+ D RFQS A+ ALQEA+EAYLVGLFEDTNLCAI
Sbjct: 80 FKVDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAI 114
Score = 47.6 bits (108), Expect = 7e-06
Identities = 23/27 (85%), Positives = 23/27 (85%)
Frame = -1
Query: 519 LVCYHAKRVTIMPKDIQLARRIRGERA 439
L HAKRVTIM KDIQLARRIRGERA
Sbjct: 111 LCAIHAKRVTIMSKDIQLARRIRGERA 137
>At5g12910.1 68418.m01481 histone H3, putative similar to histone H3
from Mus musculus GI:51301, Gallus gallus GI:211859,
Medicago sativa GI:166384, Pisum sativum SP|P02300;
contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
Length = 131
Score = 54.4 bits (125), Expect = 6e-08
Identities = 23/40 (57%), Positives = 31/40 (77%)
Frame = -2
Query: 626 EKRSGFQTDWRFQSAAIGALQEASEAYLVGLFEDTNLCAI 507
E + D RFQ+ A+ ALQEA+EA++VG+FEDTNLCA+
Sbjct: 69 EIAQSLKADLRFQTGAVSALQEAAEAFMVGMFEDTNLCAM 108
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/26 (73%), Positives = 22/26 (84%)
Frame = -1
Query: 519 LVCYHAKRVTIMPKDIQLARRIRGER 442
L HAKR TIMPKDIQLA+R+RG+R
Sbjct: 105 LCAMHAKRSTIMPKDIQLAKRLRGDR 130
>At1g01370.1 68414.m00052 centromeric histone H3 HTR12 (HTR12)
similar to histone H3 GB:X17141 GI:10795 from
Tetrahymena pyriformis, GI:161790 from Tetrahymena
thermophila; contains Pfam profile PF00125 Core histone
H2A/H2B/H3/H4
Length = 178
Score = 40.7 bits (91), Expect = 8e-04
Identities = 19/30 (63%), Positives = 24/30 (80%)
Frame = -2
Query: 596 RFQSAAIGALQEASEAYLVGLFEDTNLCAI 507
R+ + A+ ALQEA+E YLVGLF D+ LCAI
Sbjct: 124 RWTAEALVALQEAAEDYLVGLFSDSMLCAI 153
Score = 33.5 bits (73), Expect = 0.12
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = -1
Query: 519 LVCYHAKRVTIMPKDIQLARRIRGE 445
L HA+RVT+M KD +LARR+ G+
Sbjct: 150 LCAIHARRVTLMRKDFELARRLGGK 174
>At3g14370.1 68416.m01818 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 480
Score = 29.1 bits (62), Expect = 2.5
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = +1
Query: 370 FNISET*KSYRITSNQNYN*TNLSTFTTDSSSKLNILRHDGHTFGVIAHKLVSSN 534
F S S ++ N + ++ T ++ SSS +N RHD H + + KL+SS+
Sbjct: 26 FASSSARTSLTLSFNDRLSTSSAVTTSSTSSSSVNHRRHDPHWSAIKSAKLLSSD 80
>At4g31160.1 68417.m04423 transducin family protein / WD-40 repeat
family protein contains 2 WD-40 repeats (PF00400);
KIAA0800 protein, Homo sapiens GI:3882321 EMBL:AB018343
Length = 1846
Score = 27.5 bits (58), Expect = 7.7
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = -3
Query: 616 QDFKLIGVSSLPPSELSRRQARLISLA-CSKTPTCVLSRQTCD 491
++FK G S +R +I A S+ PTCV S QT D
Sbjct: 449 EEFKSSGSEEAAVSAATRAAITVIDAAEVSRNPTCVTSDQTTD 491
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,995,459
Number of Sequences: 28952
Number of extensions: 214444
Number of successful extensions: 544
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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