Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0812
(588 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_1036 + 9021395-9021658,9024214-9024690 42 5e-04
05_03_0604 - 16132173-16132391,16132488-16132556,16132824-161328... 41 8e-04
06_01_1008 - 7853089-7854147 34 0.073
08_02_1310 - 26037025-26038074 33 0.17
08_02_1304 - 26008105-26009070 33 0.22
08_02_1251 - 25592537-25593380,25593589-25593893 31 0.52
07_03_1436 - 26543846-26546806 31 0.90
10_08_0082 + 14713989-14714046,14714109-14714953 29 2.7
08_01_0797 + 7711772-7712869 29 2.7
04_04_0804 + 28171110-28171176,28171829-28172317,28172384-28173072 28 4.8
03_03_0258 - 15905847-15905990,15906088-15906244,15906374-159065... 28 6.3
10_08_0091 + 14747934-14748107,14750695-14751021 27 8.4
02_02_0543 + 11360514-11361350,11361434-11361559,11361648-113619... 27 8.4
>07_01_1036 + 9021395-9021658,9024214-9024690
Length = 246
Score = 41.5 bits (93), Expect = 5e-04
Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Frame = +1
Query: 247 IARHXLVLSVCSPYFQEMFK--MNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEEL 420
+ H ++L+ SP F+ M + M ++ I+ + DVS+ LR + +MY E + ++
Sbjct: 81 VPAHRVILASRSPVFRAMLENEMEESRSGIIKIYDVSYDVLRAFVHYMYTAEALLDEQMA 140
Query: 421 ASFISTAEQLQVKGL 465
+ + AE+ +VK L
Sbjct: 141 SDLLVLAEKYEVKNL 155
>05_03_0604 -
16132173-16132391,16132488-16132556,16132824-16132898,
16132981-16133113,16133188-16133297,16133360-16133407,
16133657-16133983,16135006-16135233,16135360-16135689,
16135780-16136586
Length = 781
Score = 40.7 bits (91), Expect = 8e-04
Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Frame = +1
Query: 256 HXLVLSVCSPYFQEMFK--MNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEEL 420
H L+LS+ S F +MF M + VF +DV A L+QFMY GE+ V EE+
Sbjct: 366 HKLILSLWSMTFDKMFTNGMKESSASNVFFEDVPVEAFFLLIQFMYSGELKVDIEEI 422
>06_01_1008 - 7853089-7854147
Length = 352
Score = 34.3 bits (75), Expect = 0.073
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Frame = +1
Query: 196 LLSRGDLVDVTLAAEXIIARHXLVLSVCSPYFQEMF--KMNPTQHPIVFLKDVSHSALRD 369
L +G V +A E +A H ++L+ SP F F M + V +KD+ S +
Sbjct: 172 LSEKGADVTFVVAGESFLA-HKIILAARSPVFMAEFFGPMKESSSQCVEIKDIEASVFKA 230
Query: 370 LLQFMYQG 393
+L F+Y G
Sbjct: 231 MLHFIYTG 238
>08_02_1310 - 26037025-26038074
Length = 349
Score = 33.1 bits (72), Expect = 0.17
Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = +1
Query: 211 DLVDVTLAAEXIIAR-HXLVLSVCSPYFQEMF--KMNPTQHPIVFLKDVSHSALRDLLQF 381
D DV L R H VL+ SP F+ M P V L+D+ +A R +L F
Sbjct: 177 DTADVALVVGGETFRAHRAVLAARSPVFKAALFGSMAEATAPSVALRDMDPAAFRAVLHF 236
Query: 382 MYQGEVNVKQEELASF 429
+Y + +ELA F
Sbjct: 237 IYTDALPDDIDELAGF 252
>08_02_1304 - 26008105-26009070
Length = 321
Score = 32.7 bits (71), Expect = 0.22
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = +1
Query: 256 HXLVLSVCSPYFQE--MFKMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEELASF 429
H VL+ SP F+ + M P V L+D+ + R LL F+Y +V Q E +S
Sbjct: 168 HRAVLAARSPVFRAELLGSMAEATMPCVTLRDIEPATFRALLHFVY---TDVLQIEGSSS 224
Query: 430 ISTAEQLQ 453
ST + LQ
Sbjct: 225 TSTTDLLQ 232
>08_02_1251 - 25592537-25593380,25593589-25593893
Length = 382
Score = 31.5 bits (68), Expect = 0.52
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +1
Query: 256 HXLVLSVCSPYFQEMFKMNPTQHPI--VFLKDVSHSALRDLLQFMYQGE 396
H +L+VCSP F+ + + + + L D+ + LL FMY G+
Sbjct: 238 HRALLAVCSPVFKALLLSSTAEAAACSITLNDIKPAMFEALLHFMYTGD 286
>07_03_1436 - 26543846-26546806
Length = 986
Score = 30.7 bits (66), Expect = 0.90
Identities = 23/112 (20%), Positives = 46/112 (41%), Gaps = 3/112 (2%)
Frame = +1
Query: 211 DLVDVTLAAEXIIARHXLVLSVCSPYFQEMFKMNPTQHPIVFL-KDVSHSAL--RDLLQF 381
++ D A I+ R L + P++ M P ++ L DV + ++ +
Sbjct: 864 EVADFETAYHAILGRPALAKFMAVPHYTYMMMKMPGPRGVISLWSDVKQAVTCDKESCEM 923
Query: 382 MYQGEVNVKQEELASFISTAEQLQVKGLTGNQNEESSTPSKPSRLRGQAPGR 537
E+ + +EE+ ++TA + +V + EES +K L P +
Sbjct: 924 AQTREITLAREEIRLAVTTASEGEVPATKLTKTEESDAKTKKIPLDPSDPNK 975
>10_08_0082 + 14713989-14714046,14714109-14714953
Length = 300
Score = 29.1 bits (62), Expect = 2.7
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Frame = +1
Query: 247 IARHXLVLSVCSPYFQE----MFKMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQE 414
+A H VL+ SP F+ + K T V ++D+ + LL+FMY + +E
Sbjct: 141 LAAHRCVLAARSPVFKAELYGLMKEGGTAAGAVHIEDIEPRVFKVLLRFMYTDSLPEMEE 200
Query: 415 E 417
E
Sbjct: 201 E 201
>08_01_0797 + 7711772-7712869
Length = 365
Score = 29.1 bits (62), Expect = 2.7
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Frame = +1
Query: 169 ANMSAGFHGLLSRGDLV--DVTLAAEX-IIARHXLVLSVCSPYFQEMFKMNPTQHPI--V 333
+ +S F LL + V DV + E A H LVL+ SP F+ F + +
Sbjct: 174 SELSEHFGKLLEEEEDVGRDVVFSVEGESFAAHKLVLAARSPVFKAEFYGEMIERGTFSI 233
Query: 334 FLKDVSHSALRDLLQFMY 387
+KD+ S R LL F+Y
Sbjct: 234 DIKDMQPSVFRALLHFIY 251
>04_04_0804 + 28171110-28171176,28171829-28172317,28172384-28173072
Length = 414
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 277 CSPYFQEMFKMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVN-VKQEEL 420
C P + F T++P+VFL+ + + DLLQ + V+ K+ EL
Sbjct: 253 CEPRKEIFFTERNTENPLVFLRFLVSTPWGDLLQIKFSRRVHRTKRLEL 301
>03_03_0258 -
15905847-15905990,15906088-15906244,15906374-15906504,
15906991-15907126,15907193-15907464,15907874-15908169,
15908279-15908646,15908922-15908987,15909064-15909129,
15909226-15909297,15909391-15909459,15909549-15909620,
15909708-15909776,15909874-15909945,15910046-15910178,
15911223-15911361
Length = 753
Score = 27.9 bits (59), Expect = 6.3
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Frame = +1
Query: 310 NPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEELASFISTA----EQLQVKGLTGNQ 477
N T ++ L+D + D+L + ++NV+ +L+ I LQ+ G + +
Sbjct: 202 NLTSLTMLHLQDNRFTGTIDVLSDLPLTDLNVQNNQLSGAIPDKLKGISNLQISGNSFSN 261
Query: 478 NEESSTPSKPSRLRGQAPGR 537
+ S PS P Q+P R
Sbjct: 262 SPVSPAPSSPPSTTSQSPPR 281
>10_08_0091 + 14747934-14748107,14750695-14751021
Length = 166
Score = 27.5 bits (58), Expect = 8.4
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Frame = +1
Query: 208 GDLVDVTLAAEXIIARHXLVLSVCSPYFQ-EMFKMNPTQHP--IVFLKDVSHSALRDLLQ 378
GDL++ A+ + + SP F E++ P +V ++D+ + LL+
Sbjct: 60 GDLLETGKGADVVFEVAGQTFAARSPVFSVELYGPMKESEPTGVVCVQDMEAQVFKALLR 119
Query: 379 FMYQGEVNVKQEE 417
FMY + +EE
Sbjct: 120 FMYTDSLPKMEEE 132
>02_02_0543 +
11360514-11361350,11361434-11361559,11361648-11361976,
11362078-11362861
Length = 691
Score = 27.5 bits (58), Expect = 8.4
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +1
Query: 379 FMYQGEVNVKQEELASFISTAEQL--QVKGLTGNQNEESSTPSKPSRLRGQAPGRHNXD 549
F++ G V + ELA + AEQL K L E S +RL G APG + D
Sbjct: 380 FLFLGPTGVSKTELAKAL--AEQLFGNAKLLVRIDMSEYVNASSVTRLIGSAPGTNGYD 436
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,380,876
Number of Sequences: 37544
Number of extensions: 264101
Number of successful extensions: 655
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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