Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0812
(588 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g30600.2 68415.m03729 BTB/POZ domain-containing protein conta... 41 7e-04
At2g30600.1 68415.m03728 BTB/POZ domain-containing protein conta... 41 7e-04
At4g08455.1 68417.m01394 BTB/POZ domain-containing protein Inter... 37 0.011
At1g01640.2 68414.m00082 speckle-type POZ protein-related contai... 36 0.026
At1g01640.1 68414.m00081 speckle-type POZ protein-related contai... 36 0.026
At5g21010.1 68418.m02497 speckle-type POZ protein-related contai... 34 0.061
At2g47800.1 68415.m05966 glutathione-conjugate transporter (MRP4... 32 0.25
At5g45110.1 68418.m05536 ankyrin repeat family protein / BTB/POZ... 28 5.3
At5g39550.1 68418.m04791 zinc finger (C3HC4-type RING finger) fa... 27 7.0
>At2g30600.2 68415.m03729 BTB/POZ domain-containing protein contains
Pfam PF00651: BTB/POZ domain; contains Interpro
IPR000210/ PS50097: BTBB/POZ domain; similar to MigA
(GI:1841872) [Dictyostelium discoideum]
Length = 809
Score = 40.7 bits (91), Expect = 7e-04
Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Frame = +1
Query: 256 HXLVLSVCSPYFQEMFK--MNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVK 408
H ++LS+ S F +MF M+ + ++L DVS A + ++ FMY GE+N++
Sbjct: 367 HKVILSLWSVAFAKMFTNGMSESHSSTIYLTDVSPEAFKAMMNFMYSGELNME 419
Score = 35.9 bits (79), Expect = 0.020
Identities = 21/71 (29%), Positives = 35/71 (49%)
Frame = +1
Query: 301 FKMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEELASFISTAEQLQVKGLTGNQN 480
F + + ++ L+ VS+ L LLQ++Y G + + ELA + + +V L Q
Sbjct: 237 FPLRSSDGDVIQLRGVSYPILHALLQYIYTGRTQILESELAPLRDLSSKFEVMSLV-RQC 295
Query: 481 EESSTPSKPSR 513
EES K S+
Sbjct: 296 EESIDHFKLSK 306
>At2g30600.1 68415.m03728 BTB/POZ domain-containing protein contains
Pfam PF00651: BTB/POZ domain; contains Interpro
IPR000210/ PS50097: BTBB/POZ domain; similar to MigA
(GI:1841872) [Dictyostelium discoideum]
Length = 809
Score = 40.7 bits (91), Expect = 7e-04
Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Frame = +1
Query: 256 HXLVLSVCSPYFQEMFK--MNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVK 408
H ++LS+ S F +MF M+ + ++L DVS A + ++ FMY GE+N++
Sbjct: 367 HKVILSLWSVAFAKMFTNGMSESHSSTIYLTDVSPEAFKAMMNFMYSGELNME 419
Score = 35.9 bits (79), Expect = 0.020
Identities = 21/71 (29%), Positives = 35/71 (49%)
Frame = +1
Query: 301 FKMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEELASFISTAEQLQVKGLTGNQN 480
F + + ++ L+ VS+ L LLQ++Y G + + ELA + + +V L Q
Sbjct: 237 FPLRSSDGDVIQLRGVSYPILHALLQYIYTGRTQILESELAPLRDLSSKFEVMSLV-RQC 295
Query: 481 EESSTPSKPSR 513
EES K S+
Sbjct: 296 EESIDHFKLSK 306
>At4g08455.1 68417.m01394 BTB/POZ domain-containing protein Interpro
IPR000210/ PS50097: BTBB/POZ domain; similar to POZ 56
protein (GI:17483747) [Mus musculus]
Length = 243
Score = 36.7 bits (81), Expect = 0.011
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Frame = +1
Query: 247 IARHXLVLSVCSPYFQEMFK--MNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEEL 420
I H VL SP F+ M + M + + + DVS+ ALR + ++Y E + ++
Sbjct: 80 IPAHKSVLVSRSPVFKAMLENEMEESLSGTIKISDVSYDALRTFVYYLYTAEACLDEQMA 139
Query: 421 ASFISTAEQLQVKGL 465
+ +E+ QVK L
Sbjct: 140 CDLLVMSEKYQVKHL 154
>At1g01640.2 68414.m00082 speckle-type POZ protein-related contains
Pfam profile:PF00651 BTB/POZ domain; similar to
Speckle-type POZ protein (SP:O43791) [Homo sapiens]
Length = 207
Score = 35.5 bits (78), Expect = 0.026
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = +1
Query: 247 IARHXLVLSVCSPYFQEMF---KMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEE 417
I H VL+ S F+ M + + + L D+SH L+ LL+F+Y G + +
Sbjct: 37 IPTHKAVLAARSKVFRNMLDSDECKTSPEESITLPDLSHDELKSLLEFLYSGNLKAPYNQ 96
Query: 418 LASFISTAEQLQVKGL 465
S A++ + L
Sbjct: 97 YRSLYLAADKYDISYL 112
>At1g01640.1 68414.m00081 speckle-type POZ protein-related contains
Pfam profile:PF00651 BTB/POZ domain; similar to
Speckle-type POZ protein (SP:O43791) [Homo sapiens]
Length = 207
Score = 35.5 bits (78), Expect = 0.026
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = +1
Query: 247 IARHXLVLSVCSPYFQEMF---KMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEE 417
I H VL+ S F+ M + + + L D+SH L+ LL+F+Y G + +
Sbjct: 37 IPTHKAVLAARSKVFRNMLDSDECKTSPEESITLPDLSHDELKSLLEFLYSGNLKAPYNQ 96
Query: 418 LASFISTAEQLQVKGL 465
S A++ + L
Sbjct: 97 YRSLYLAADKYDISYL 112
>At5g21010.1 68418.m02497 speckle-type POZ protein-related contains
Pfam PF00651 : BTB/POZ domain; contains Pfam PF00917:
MATH domain; similar to Speckle-type POZ protein
(SP:O43791) [Homo sapiens]
Length = 410
Score = 34.3 bits (75), Expect = 0.061
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Frame = +1
Query: 169 ANMSAGFHGLLSRGDLVDVT--LAAEXIIARHXLVLSVCSPYFQ-EMFKMNPTQHPIVFL 339
+ + + F LL + D+T +A E +A H LVL+ SP+F+ + F + V +
Sbjct: 182 SELGSHFGVLLDSMEGSDITFNIAGEKFLA-HKLVLAARSPFFKSKFFSEFEANNTEVTI 240
Query: 340 KDVSHSALRDLLQFMYQ 390
D+ + LLQFMY+
Sbjct: 241 NDLEPKVFKALLQFMYK 257
>At2g47800.1 68415.m05966 glutathione-conjugate transporter (MRP4)
identical to AtMRP4 GI:2959767 from [Arabidopsis
thaliana]
Length = 1516
Score = 32.3 bits (70), Expect = 0.25
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 5/56 (8%)
Frame = +1
Query: 358 ALRDLLQFMYQGEVNVKQEELASFIS---TAEQL--QVKGLTGNQNEESSTPSKPS 510
A+ + F+ +++ E++ASF S TA L V+G+TG E+++P+KPS
Sbjct: 183 AVTGIFHFLSDAATSLRAEDVASFFSFPLTAFLLIASVRGITGLVTAETNSPTKPS 238
>At5g45110.1 68418.m05536 ankyrin repeat family protein / BTB/POZ
domain-containing protein contains Pfam domain, PF00023:
Ankyrin repeat and Pfam domain, PF00651: BTB/POZ domain
Length = 586
Score = 27.9 bits (59), Expect = 5.3
Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 13/88 (14%)
Frame = +1
Query: 175 MSAGFHGLLSRGDL--VDVTLAAEXI-IARHXLVLSVCSPYFQEMF----KMNPTQHPIV 333
+S+ LLS D D + + + + H +L+ S +FQ++F K++ T+ P
Sbjct: 44 LSSNLEQLLSNSDCDYSDAEIIVDGVPVGVHRCILAARSKFFQDLFKKEKKISKTEKPKY 103
Query: 334 FLKD------VSHSALRDLLQFMYQGEV 399
L++ V+H A L ++Y G +
Sbjct: 104 QLREMLPYGAVAHEAFLYFLSYIYTGRL 131
>At5g39550.1 68418.m04791 zinc finger (C3HC4-type RING finger)
family protein contains zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 617
Score = 27.5 bits (58), Expect = 7.0
Identities = 13/56 (23%), Positives = 27/56 (48%)
Frame = +1
Query: 367 DLLQFMYQGEVNVKQEELASFISTAEQLQVKGLTGNQNEESSTPSKPSRLRGQAPG 534
DL +F+ +VN + E+ +E+ ++ + EES P+K ++ + G
Sbjct: 554 DLSEFLQNPQVNREMMEIIENFKKSEEEADASISEEEEEESEPPTKKIKMDNNSVG 609
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,865,998
Number of Sequences: 28952
Number of extensions: 220861
Number of successful extensions: 576
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1161268208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -